Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39090 314 / 4e-108 EMB3005, RD19A, RD19 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) AT2G21430 305 / 1e-104 Papain family cysteine protease (.1) AT4G16190 281 / 6e-95 Papain family cysteine protease (.1) AT3G54940 250 / 8e-83 Papain family cysteine protease (.2) AT3G19400 107 / 1e-27 Cysteine proteinases superfamily protein (.1.2) AT5G60360 107 / 1e-27 SAG2, AALP SENESCENCE ASSOCIATED GENE2, aleurain-like protease (.1.2.3) AT3G19390 107 / 2e-27 Granulin repeat cysteine protease family protein (.1) AT3G45310 105 / 4e-27 Cysteine proteinases superfamily protein (.1.2) AT1G06260 104 / 1e-26 Cysteine proteinases superfamily protein (.1) AT1G20850 102 / 5e-26 XCP2 xylem cysteine peptidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017487 [exp] 370 / 2e-130 AT4G39090 550 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Lus10028797 [exp] 370 / 7e-130 AT4G39090 559 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Lus10002103 [exp] 288 / 4e-99 AT4G39090 431 / 5e-153 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Lus10024303 [exp] 289 / 6e-98 AT4G39090 520 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Lus10038684 [exp] 234 / 2e-76 AT3G54940 499 / 1e-177 Papain family cysteine protease (.2) Lus10037951 [exp] 206 / 5e-64 AT3G54940 451 / 6e-157 Papain family cysteine protease (.2) Lus10020734 [exp] 105 / 4e-27 AT5G45890 390 / 4e-136 senescence-associated gene 12 (.1) Lus10034895 [exp] 105 / 6e-27 AT3G45310 524 / 0.0 Cysteine proteinases superfamily protein (.1.2) Lus10020722 [exp] 103 / 2e-26 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G160300 [exp] 336 / 1e-116 AT4G39090 549 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Potri.009G121300 [exp] 332 / 5e-115 AT4G39090 571 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Potri.002G028700 [exp] 318 / 1e-109 AT4G39090 536 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Potri.005G234000 [exp] 313 / 8e-108 AT4G39090 501 / 9e-179 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Potri.010G228400 [exp] 232 / 1e-75 AT3G54940 501 / 6e-179 Papain family cysteine protease (.2) Potri.006G141700 [exp] 106 / 2e-27 AT3G45310 590 / 0.0 Cysteine proteinases superfamily protein (.1.2) Potri.004G055900 [exp] 104 / 9e-27 AT5G45890 438 / 5e-155 senescence-associated gene 12 (.1) Potri.007G047600 [exp] 101 / 2e-25 AT5G43060 461 / 9e-162 Granulin repeat cysteine protease family protein (.1) Potri.007G076000 [exp] 99 / 8e-25 AT5G45890 407 / 2e-142 senescence-associated gene 12 (.1) Potri.007G075300 [exp] 99 / 9e-25 AT5G45890 406 / 6e-142 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease
Representative CDS sequence Show only first row Show all	>Lus10017489 pacid=23163130 polypeptide=Lus10017489 locus=Lus10017489.g ID=Lus10017489.BGIv1.0 annot-version=v1.0 ATGAGGTTTGATCTTCTTATAACCTTCCCTCTTTACATAACTTCAGCAAGAGCTATTATTAACGAATTGGTCGATTACCAGTGTGACCCAGAAGAGAAAG GAGCATGCGACGCTGGATGTGGAGGAGGCCTAATGAACAGTGCCTTCGAGTACACTCTAAAAGCCGGAGGGCTCATGCGAGAGGAAGACTACCCTTACAC TGGCACTGACCGCAGCACCTGCAAGTTCGACAAGAGCAAGATCGCAGCCAAAGTAGCAAACTTTAGTGTCATCTCCATTGATGAAGACCAGATTGCTGCT AACCTCGTCCAGAGTGGCCCTCTCGCTGTGGCGATCAATGCGGTGTACATGCAGACCTACATCGGCGGGGTGTCGTGCCCTTACATCTGCTCGAAGAGGC TAGACCACGGTGTGCTATTGGTGGGGTATGGGGAGGCAGGGTACGCACCGATCAGGATGAAGGAGAAGCCGTACTGGATCATAAAGAACTCGTGGGGGGA GACCTGGGGGGAGAGTGGCTACTACAAGATCTGCAGAGGAAAGAACGTCTGCGGAGTTGATTCCATGGTTTCCTCTGTTGCTGCTGTTCAGACCACTGCT CATTAG
AA sequence Show only first row Show all	>Lus10017489 pacid=23163130 polypeptide=Lus10017489 locus=Lus10017489.g ID=Lus10017489.BGIv1.0 annot-version=v1.0 MRFDLLITFPLYITSARAIINELVDYQCDPEEKGACDAGCGGGLMNSAFEYTLKAGGLMREEDYPYTGTDRSTCKFDKSKIAAKVANFSVISIDEDQIAA NLVQSGPLAVAINAVYMQTYIGGVSCPYICSKRLDHGVLLVGYGEAGYAPIRMKEKPYWIIKNSWGETWGESGYYKICRGKNVCGVDSMVSSVAAVQTTA H

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10017489 [exp]	0	1
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10017487 [exp]	1.0	0.9937
AT2G17150		NLP1	Plant regulator RWP-RK family ...		Lus10023931 [exp]	4.0	0.9332
AT3G06240			F-box family protein (.1)		Lus10014793 [exp]	4.9	0.9360
AT5G50760			SAUR-like auxin-responsive pro...		Lus10011332 [exp]	5.5	0.9236
AT5G03380			Heavy metal transport/detoxifi...		Lus10023924 [exp]	6.0	0.9424
AT1G67810		SUFE2	sulfur E2 (.1)		Lus10006468 [exp]	8.2	0.8975
AT1G64300			Protein kinase family protein ...		Lus10032357 [exp]	9.8	0.8895
AT5G43200			Zinc finger, C3HC4 type (RING ...		Lus10019685 [exp]	12.2	0.9026
AT1G76360			Protein kinase superfamily pro...		Lus10013223 [exp]	13.0	0.9108
AT5G41810			unknown protein		Lus10001907 [exp]	13.4	0.9279

Compare expression of checked genes

Lus10017489 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.