Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39080 1257 / 0 VHA-A3 vacuolar proton ATPase A3 (.1) AT2G21410 1240 / 0 VHA-A2 vacuolar proton ATPase A2 (.1) AT2G28520 984 / 0 VHA-A1 vacuolar proton ATPase A1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028796 [exp] 1458 / 0 AT4G39080 1193 / 0.0 vacuolar proton ATPase A3 (.1) Lus10024304 [exp] 1212 / 0 AT4G39080 1288 / 0.0 vacuolar proton ATPase A3 (.1) Lus10002104 [exp] 1163 / 0 AT4G39080 1226 / 0.0 vacuolar proton ATPase A3 (.1) Lus10036133 [exp] 1004 / 0 AT2G28520 1360 / 0.0 vacuolar proton ATPase A1 (.1) Lus10018129 [exp] 1003 / 0 AT2G28520 1367 / 0.0 vacuolar proton ATPase A1 (.1) Lus10017488 [exp] 153 / 2e-43 AT4G39080 145 / 2e-41 vacuolar proton ATPase A3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G121400 [exp] 1288 / 0 AT4G39080 1300 / 0.0 vacuolar proton ATPase A3 (.1) Potri.004G160400 [exp] 1266 / 0 AT4G39080 1245 / 0.0 vacuolar proton ATPase A3 (.1) Potri.002G028600 [exp] 1182 / 0 AT2G21410 1187 / 0.0 vacuolar proton ATPase A2 (.1) Potri.005G234100 [exp] 1171 / 0 AT2G21410 1194 / 0.0 vacuolar proton ATPase A2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01496 [flax] [poplar] V_ATPase_I V-type ATPase 116kDa subunit family
Representative CDS sequence Show only first row Show all	>Lus10017490 pacid=23163192 polypeptide=Lus10017490 locus=Lus10017490.g ID=Lus10017490.BGIv1.0 annot-version=v1.0 ATGGCTGGCGCAGGTGGAGGAGGATGCTGCCCTCCCATGGATCTCTTCCGCTCCGAGCCGATGCACCTCATCCAGCTCATCATCCCTATCGAGTCCTCTC ATCTCACCGTCTCTTACCTCGGCGACCTCGGCCTCATTCAGTTCAAAGATCTCAATTCTGATAAGAGCCCATTTCAGAGAGCTTATGCAGCTCAGATTAA AAAAACTGGAGAGATGGCCCGAAAGTTAAGGTTCTTCAAAGAGCAAATGGAGAAGGCAGGTGTGTTGCCCGTAACTAAACTGGAGGAGCAAGCTGATATC AACATGGATGACTTGGAGGTCAAACTTGGGGAACTCGAGGCAGAGCTGGTTGAAGTGAATGCAAATGACGATAAGTTGCAGCGTGCTTATAATGAACTTA TAGAGTATAAGCTTGTCCTACAGAAGGCTGGGGAATTTTTCTCTTCAGCTCTAAACAGTGCAGCTGCACAGCAGAGGGAAATTGAATCTCAATCTGGGGA AGGATCATTGGAGACTCCTTTACTGGACCAGGAAGCAGCAACTGATTCGTCAAAGCAAGTGAAGCTGGGGTTTCTGACTGGCTTGGTTTCCAAAGAGAAA TCCTTGGCGTTTGAAAGGATTATCTTCCGTGCTACAAGGGGAAATGTATTCCTCAGGCAGACTGCAGTTGATCAACCTGTTACTGATCCTGTTTCTGGGG AGAAGGTTGAGAAGAATGTTTTCGTCATATTCTATTCTGGAGAAAGAGCAAAGACCAAAATACTTAAAATATGTGACGCGTTTGGTGCAAATCGTTATCC TTTCTCAGAGGATGTCAGCAAGCAAGGTCAGATGGTTAATCAGGTCACTGGAAGGCTAACAGAGATGAAGACCACCATCGATGCAGGTTTACTTCAGAGA GACAGTTTGCTAAAGACAATTAGCAAACAATACGAGCAGTGGAATTCATTGGTTAAGAAGGAGAAATCTGTCTATCACACCCTCAACATGCTGAGTCTTG ATGTGACAAAAAAATGTCTTGTTGGTGAGGGATGGAGTCCCGTGTTCGCCGGTAAGCAGATCCAAGATGCACTACACCGGGCGTCAATTGATTCAAATTC TCAAATTGGATCCATTTTCCAAGTTTTGGATACAAAGGAAGCACCGCCTACTTATTTCCGTACAAACAAATTCACTACCGCCTTTCAAGAAATCGTTGAT GCATATGGTGTGGCCAAATACCAAGAGGCAAATCCAGGTGTATTTACTATTGTCACGTTCCCCTTCCTGTTCGCAGTCATGTTTGGTGATTGGGGTCATG GAATATGTTTGTTGCTTGCAACACTTGTGTTCATCGCAAGAGAAAAGAAATTATCAAGCCAGAAGCTTGGAGATATCACTGAAATGGCATTTGGCGGTCG TTATGTCATCCTGATGATGTCACTGTTCTCCATTTATACCGGGTTGATCTATAACGAATTCTTCTCAGTGCCCTTCGAATTATTCGGCCGCACTGCTTAT GATTGCCGTGGTCCCTCTTGCGGGGATTCCACAACCATGGGTCTGATCAAAGTGCGCCCTACTTACCCATTTGGTGTTGACCCTGTATGGCCATTGGGTT TTGCGCCTGTATGGCACGGTACCCGCAGCGAGCTGCCGTTTCTCAATTCACTGAAGATGAAAATGTCGATCCTTCTTGGAGTTGCCCAGATGAACCTGGG GATCATACTGAGTTATTTCAATGCACTATACTTCAAGAATAGCTTAAACACCTGGTTCCAATTCATTCCTCAGATGATATTCTTGAACAGCTTGTTCGGC TACTTGTCCGTCCTCATCATTATTAAGTGGATAACTGGCTCGAAAGCCGATTTGTACCATGTCATGATCTACATGTTCCTGAGTCCAACCGACGAGCTTG GCGAAAACCAACTCTTCCCGGGACAGAGAAATGCTCAGATGATATTGTTGTTGCTGGCCCTCGTCTCCGTGCCGTGGATGCTGTTCCCCAAGCCTTTCCT TTTGAAGAGGCAGTACGAGAAGACGCACCAAGGCCAAGCATATGCTCCACTCCCGAGCGGGGATGAATCGGTCGAGTTGGTAGCAGCAGCCCACGATCCA CATGGTCATGAGGAATTCGAGTTCAGTGAAGTCTTCGTTCATCAGATGATACACACAATCGAATTCGTCCTTGGAGCAGTTTCGAACACAGCATCTTACC TCCGTCTATGGGCTCTCAGTCTTGCTCACTCGGAACTGTCCAGTGTATTCTACGAAAAGGTCCTGCTCCTTGCATGGGGGTTCAACAACGTGATCATCCT CATCATCGGCATCATCGTCTTCATCTTCGCAACCGTCGGAGTACTTCTCGTGATGGAGACTCTTAGTGCCTTCCTCCACGCTCTACGTCTCCACTGGGTA GAGTTCCAGAACAAGTTCTACGAAGGTGATGGATACAAGTTCAGTCCCTACTCCTTTGCACTAATCGATTACGAAGAGGAGTAA
AA sequence Show only first row Show all	>Lus10017490 pacid=23163192 polypeptide=Lus10017490 locus=Lus10017490.g ID=Lus10017490.BGIv1.0 annot-version=v1.0 MAGAGGGGCCPPMDLFRSEPMHLIQLIIPIESSHLTVSYLGDLGLIQFKDLNSDKSPFQRAYAAQIKKTGEMARKLRFFKEQMEKAGVLPVTKLEEQADI NMDDLEVKLGELEAELVEVNANDDKLQRAYNELIEYKLVLQKAGEFFSSALNSAAAQQREIESQSGEGSLETPLLDQEAATDSSKQVKLGFLTGLVSKEK SLAFERIIFRATRGNVFLRQTAVDQPVTDPVSGEKVEKNVFVIFYSGERAKTKILKICDAFGANRYPFSEDVSKQGQMVNQVTGRLTEMKTTIDAGLLQR DSLLKTISKQYEQWNSLVKKEKSVYHTLNMLSLDVTKKCLVGEGWSPVFAGKQIQDALHRASIDSNSQIGSIFQVLDTKEAPPTYFRTNKFTTAFQEIVD AYGVAKYQEANPGVFTIVTFPFLFAVMFGDWGHGICLLLATLVFIAREKKLSSQKLGDITEMAFGGRYVILMMSLFSIYTGLIYNEFFSVPFELFGRTAY DCRGPSCGDSTTMGLIKVRPTYPFGVDPVWPLGFAPVWHGTRSELPFLNSLKMKMSILLGVAQMNLGIILSYFNALYFKNSLNTWFQFIPQMIFLNSLFG YLSVLIIIKWITGSKADLYHVMIYMFLSPTDELGENQLFPGQRNAQMILLLLALVSVPWMLFPKPFLLKRQYEKTHQGQAYAPLPSGDESVELVAAAHDP HGHEEFEFSEVFVHQMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAWGFNNVIILIIGIIVFIFATVGVLLVMETLSAFLHALRLHWV EFQNKFYEGDGYKFSPYSFALIDYEEE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Lus10017490 [exp]	0	1
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Lus10042137 [exp]	3.7	0.9221
AT2G05170		ATVPS11	vacuolar protein sorting 11 (....		Lus10012332 [exp]	4.2	0.8992
AT1G31780			unknown protein		Lus10037281 [exp]	4.5	0.9229
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10014548 [exp]	6.0	0.9164
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10013468 [exp]	6.9	0.8955
AT3G18350			Plant protein of unknown funct...		Lus10013865 [exp]	8.1	0.8630
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Lus10037701 [exp]	8.4	0.9039
AT5G05520			Outer membrane OMP85 family pr...		Lus10009835 [exp]	10.2	0.8753
AT5G20300		Toc90	translocon at the outer envelo...		Lus10006471 [exp]	11.0	0.8768
AT5G10540			Zincin-like metalloproteases f...		Lus10004276 [exp]	16.3	0.8723

Compare expression of checked genes

Lus10017490 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.