Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16440 1192 / 0 MCM4 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) AT5G44635 366 / 6e-114 MCM6 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) AT4G02060 352 / 6e-110 MCM7, PRL PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) AT2G07690 337 / 3e-104 MCM5 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) AT1G44900 341 / 1e-103 ATMCM2, MCM2 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) AT5G46280 321 / 2e-97 MCM3 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) AT3G09660 286 / 1e-84 MCM8 minichromosome maintenance 8 (.1) AT2G14050 234 / 9e-67 MCM9 minichromosome maintenance 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028795 [exp] 1584 / 0 AT2G16440 1255 / 0.0 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10036244 [exp] 357 / 2e-110 AT5G44635 1262 / 0.0 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10038384 [exp] 356 / 4e-110 AT5G44635 1257 / 0.0 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10001452 [exp] 348 / 2e-108 AT4G02060 1224 / 0.0 PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10002427 [exp] 348 / 2e-108 AT4G02060 1223 / 0.0 PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10009052 [exp] 330 / 8e-97 AT1G44900 1263 / 0.0 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10015267 [exp] 328 / 1e-96 AT5G46280 1098 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10025389 [exp] 311 / 1e-93 AT5G46280 1096 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10023169 [exp] 290 / 2e-85 AT3G09660 1038 / 0.0 minichromosome maintenance 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G121500 [exp] 1283 / 0 AT2G16440 1236 / 0.0 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.001G074000 [exp] 369 / 6e-115 AT5G44635 1312 / 0.0 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.014G121000 [exp] 349 / 1e-108 AT4G02060 1255 / 0.0 PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.004G131600 [exp] 327 / 1e-99 AT5G46280 1123 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.001G070500 [exp] 329 / 3e-99 AT1G44900 1348 / 0.0 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.018G112800 [exp] 320 / 2e-97 AT2G07690 1173 / 0.0 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.006G188700 [exp] 319 / 3e-97 AT2G07690 1170 / 0.0 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.006G131900 [exp] 313 / 2e-94 AT3G09660 1037 / 0.0 minichromosome maintenance 8 (.1) Potri.019G014403 [exp] 245 / 1e-70 AT2G14050 989 / 0.0 minichromosome maintenance 9 (.1) Potri.003G157001 [exp] 80 / 4e-18 AT5G44635 0 / 1 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00493 [flax] [poplar] MCM MCM P-loop domain
Representative CDS sequence Show only first row Show all	>Lus10017491 pacid=23163201 polypeptide=Lus10017491 locus=Lus10017491.g ID=Lus10017491.BGIv1.0 annot-version=v1.0 ATGGCTTCCGACACAACTCCGACTCGCTTCAACAATACACCTTCGTCGCCGGATGACTCATTCTCAAGTCCAATCGGAGACGCAGTTTCTTCTCCGGCAG CTGGAGGATCTCGCCGGAGAAAACGAGGGAGAGGAGGCAGATCCGCCGGATACGACACTCCTCCTAACCCTAACAACTCGCGTTTCGCCAATTCAGAGTC AACTCCAACTCCGCACCATAGCGGTTCGACCTTCCGCCGGGGACGTCCAACGACGCCTTCCTCCACTTCGGAGGGCGCCCCTTCGTCCGAGGCTGGGGAG GACATGGACGAGGCGGCAGCTCCGACTTTTGTTTGGGGAACGAATATCAGCGTGCAGGATGTGAAGAGCGCGATTCAGATGTTTCTGAAGAACTTTAGGG ATGAAAGGAGTAGTCAAGGGACTGAGATTTACGAAGAAGGGAAATACATGAAGGCGATCCACAGGGTGTTGGAGATTGAAGGGGAATGGTTGGATGTTGA TGCACACGATGTGTTTAATTATAATACTGAACTGTATGGGAAGATGGTTAGGTATCCGCTTGAGGTTCTGGCGATTTTCGATATTGTACTGATGGATATG GTGAGTCTGACCAACCCGCTATTTGAAAAGCATGTCCAAGTTCGGATATTCAATCTGAAGAGCTCGACTAGCATGAGAAATCTCAACCCTTCAGACATTG AGAAGATGGTGTCACTGAAGGGGATGATAATTCGGGCTAGTTCTATCATACCGGAGATCAGAGAGGCAATATTTAGATGCCTTGTGTGCGGATACTTCTC TGATCCTATTGTTGTAGACAGAGGTCGGATCAGTGAACCTACCTCGTGCCTGAAGCAAGAATGTCAGGCAAAGAATGCTATGACATTAGTTCACAACCGC TGCAGGTTTGCTGATAAGCAGATTGTGAGACTTCAGGAGACACCAGATGAGATCCCTGATGGTGGAACACCACATACGGTCAGTCTTTTGATGCACGACA AGCTGGTCGATGCTGGAAAGCCAGGTGACAGAGTTGAGGTGACTGGAATTTATAGGGCTATGAGCGTCAGGGTTGGACCCACTCAAAGAACTGTGAAGTC ACTATTCAAGGCATGGTTTAATCTTTCTACTTACATTGACTGCCTTCATATCAAGAAAACTGACAAGTCAAGAATGGATGCCATGGAAACTGATAAAGGC CCTGAAAAATGTGATGAAGATGTTGAATTTGATGAAGAGAAGATAAAGCAGTTGAGAGAGCTTTCAAAGCTGCCTGATATATACGACAGATTAACCAGGT CTTTGGCACCAAACATTTGGGAGCTAGATGATGTGAAAAGGGGCCTTCTTTGTCAGCTCTTTGGTGGGAATGCCTTGCAATTACCATCTGGTGCGAGCTT CCGTGGTGATATAAACATCCTACTGGTTGGTGATCCTGGTACAAGCAAGTCTCAGCTGCTCCAGTACATACACAAGCTATCACCTCGTGGTATTTATACC AGTGGAAGGGGAAGCTCTGCTGTTGGCTTGACTGCTTATGTCAGCAAAGATCCTGAAACAAAGGAAACGGTACTGGAGAGTGGAGCACTTGTCTTGAGTG ACAGAGGCATATGTTGCATTGATGAATTTGACAAAATGTCTGAAAATGCCAGAAGCATGTTACATGAGGTCATGGAGCAGCAAACTGTTTCTATTGCGAA GGCTGGGATTATTGCTACTCTTAATGCCAGAACATCAGTTTTGGCTTGTGCCAATCCAATCGGTTCTCGTTATAACCCCAGGTTATCCGTCATCGACAAC ATACACTTGCCTCCTACCTTGTTATCCAGGTTTGATTTGATATATTTGATCCTTGACAAAGCCGATGAGCAAACAGACAGGCACCTAGCAAGACACATCG TGGCTTTACACTTCGAAGATCCCGAGATCGCACAGCAGGGTGTTTTAGATATTGGTACATTAACTACATATATAACCTATGCTCGTAACCATATTCACCC TCAGCTATCAGACGAAGCTGCTGAGGAACTAACTCGTGGCTATGTCATAACTGCAACACCTAGACAAATAGAGAGCTTGATACGTATCAGTGAAGCACTT GCTCGAATTCGTTTCTCCGAACAGGTTGAAAAGAATGATGTAACAGAGGCATTCCGGCTTCTTGAAGTTGCTATGCAGCAGTCTGCAACAGATCACTCTA CAGGAACAATCGACATGGATCTCATAACAACCGGAGTTTCAGCCAGCGAGAGGATGAGAAGGGAAAATCTCGTAACAGCAACGACCAACATAATCATGGA GAAGTTACAAATCGGAGGACCCTCGATGCGGTTAATGGAGATATTGGAGGAGCTAAAGAAGCAGAGCTCTGTGGTTGATGTTCACCTTCATGATCTGAGA AACGCAGTTGCAACAATGGCGAGTGAAGGGTTTGTGGTTGTTCATGGCGACAGTGTAAAGAGAGCGTAA
AA sequence Show only first row Show all	>Lus10017491 pacid=23163201 polypeptide=Lus10017491 locus=Lus10017491.g ID=Lus10017491.BGIv1.0 annot-version=v1.0 MASDTTPTRFNNTPSSPDDSFSSPIGDAVSSPAAGGSRRRKRGRGGRSAGYDTPPNPNNSRFANSESTPTPHHSGSTFRRGRPTTPSSTSEGAPSSEAGE DMDEAAAPTFVWGTNISVQDVKSAIQMFLKNFRDERSSQGTEIYEEGKYMKAIHRVLEIEGEWLDVDAHDVFNYNTELYGKMVRYPLEVLAIFDIVLMDM VSLTNPLFEKHVQVRIFNLKSSTSMRNLNPSDIEKMVSLKGMIIRASSIIPEIREAIFRCLVCGYFSDPIVVDRGRISEPTSCLKQECQAKNAMTLVHNR CRFADKQIVRLQETPDEIPDGGTPHTVSLLMHDKLVDAGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKAWFNLSTYIDCLHIKKTDKSRMDAMETDKG PEKCDEDVEFDEEKIKQLRELSKLPDIYDRLTRSLAPNIWELDDVKRGLLCQLFGGNALQLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYT SGRGSSAVGLTAYVSKDPETKETVLESGALVLSDRGICCIDEFDKMSENARSMLHEVMEQQTVSIAKAGIIATLNARTSVLACANPIGSRYNPRLSVIDN IHLPPTLLSRFDLIYLILDKADEQTDRHLARHIVALHFEDPEIAQQGVLDIGTLTTYITYARNHIHPQLSDEAAEELTRGYVITATPRQIESLIRISEAL ARIRFSEQVEKNDVTEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRENLVTATTNIIMEKLQIGGPSMRLMEILEELKKQSSVVDVHLHDLR NAVATMASEGFVVVHGDSVKRA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16440		MCM4	MINICHROMOSOME MAINTENANCE 4, ...		Lus10017491 [exp]	0	1
AT4G16970			Protein kinase superfamily pro...		Lus10004357 [exp]	1.0	0.9743
AT5G44635		MCM6	MINICHROMOSOME MAINTENANCE 6, ...		Lus10036244 [exp]	3.5	0.9645
AT1G67320		EMB2813	EMBRYO DEFECTIVE 2813, DNA pri...		Lus10000602 [exp]	3.5	0.9560
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10035991 [exp]	3.7	0.9420
AT1G20720			RAD3-like DNA-binding helicase...		Lus10016027 [exp]	6.3	0.9200
AT3G18730		BRU1, MGO3, TSK	TONSOKU, MGOUN3, BRUSHY1, tetr...		Lus10037327 [exp]	8.3	0.9371
AT4G30860		SDG4, ASHR3	ASH1-related 3, SET domain gro...		Lus10006888 [exp]	8.9	0.9456
AT5G44635		MCM6	MINICHROMOSOME MAINTENANCE 6, ...		Lus10038384 [exp]	9.2	0.9519
AT4G21070		ATBRCA1	ARABIDOPSIS THALIANA BREAST CA...		Lus10036151 [exp]	9.5	0.9418
AT5G46280		MCM3	MINICHROMOSOME MAINTENANCE 3, ...		Lus10025389 [exp]	9.6	0.9552

Compare expression of checked genes

Lus10017491 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.