Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66350 86 / 4e-20 SHI SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) AT2G21400 78 / 3e-18 SRS3 SHI-related sequence3 (.1) AT3G51060 81 / 4e-18 SRS1, STY1 STYLISH 1, SHI RELATED SEQUENCE 1, Lateral root primordium (LRP) protein-related (.1) AT2G18120 76 / 5e-17 SRS4 SHI-related sequence 4 (.1) AT1G75520 74 / 1e-15 SRS5 SHI-related sequence 5 (.1) AT1G19790 73 / 3e-15 SRS7 SHI-related sequence 7 (.1.2) AT4G36260 73 / 3e-15 SRS2, STY2 STYLISH 2, SHI RELATED SEQUENCE 2, Lateral root primordium (LRP) protein-related (.1) AT5G12330 60 / 1e-10 LRP1 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028794 [exp] 193 / 1e-62 AT5G66350 123 / 5e-34 SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) Lus10028352 [exp] 78 / 6e-17 AT3G51060 243 / 4e-78 STYLISH 1, SHI RELATED SEQUENCE 1, Lateral root primordium (LRP) protein-related (.1) Lus10036032 [exp] 69 / 3e-14 AT5G12330 214 / 2e-68 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) Lus10003416 [exp] 69 / 1e-13 AT1G75520 258 / 6e-84 SHI-related sequence 5 (.1) Lus10024305 [exp] 67 / 5e-13 AT1G75520 260 / 8e-85 SHI-related sequence 5 (.1) Lus10041803 [exp] 49 / 9e-08 AT3G51060 88 / 1e-21 STYLISH 1, SHI RELATED SEQUENCE 1, Lateral root primordium (LRP) protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G121600 [exp] 90 / 2e-22 AT5G66350 181 / 3e-56 SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) Potri.004G160600 [exp] 88 / 1e-21 AT5G66350 170 / 4e-52 SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) Potri.005G118200 [exp] 79 / 1e-17 AT3G51060 233 / 6e-74 STYLISH 1, SHI RELATED SEQUENCE 1, Lateral root primordium (LRP) protein-related (.1) Potri.007G017500 [exp] 72 / 3e-15 AT3G51060 238 / 6e-76 STYLISH 1, SHI RELATED SEQUENCE 1, Lateral root primordium (LRP) protein-related (.1) Potri.002G028500 [exp] 72 / 4e-15 AT1G75520 261 / 1e-85 SHI-related sequence 5 (.1) Potri.005G234200 [exp] 62 / 2e-11 AT1G75520 222 / 2e-70 SHI-related sequence 5 (.1) Potri.009G070800 [exp] 59 / 2e-10 AT5G12330 231 / 9e-74 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) Potri.001G276200 [exp] 54 / 9e-09 AT5G12330 226 / 2e-71 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) Potri.001G027700 [exp] 46 / 5e-06 AT5G12330 157 / 4e-46 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) Potri.003G196100 [exp] 43 / 7e-05 AT5G12330 159 / 8e-47 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05142 [flax] [poplar] DUF702 Domain of unknown function (DUF702)
Representative CDS sequence Show only first row Show all	>Lus10017492 pacid=23163101 polypeptide=Lus10017492 locus=Lus10017492.g ID=Lus10017492.BGIv1.0 annot-version=v1.0 ATGATGAACGGCGGAGGAGAGACGTCGGTGGGGAGTATGAGAGGAGGAGGTGGTGGCGGGGCGGCGGGGAGGAGGTGTGAAGACTGTGGGAATCAGGCAA AGAGGGAGTGTAGATATTGGAGATGCAGGAGATGCTGCAACAGGAGAAAGTTGGAGTGCCAAACCCACGTTTCCAGCACTTGGGTTCCCACTTCCTTGAG GCGCCTACAGCAAGCAACTGCTAGGGGAAGTTCAGCTACTCATCTTCCCACCTCCCAACAACTACACCATCACCATAATCCCTCAGACATGGAAAGCGAT GATTTCCCTCGGGAAGTGACTTCGATGGCTACGTTCCATTGCTGCAAAGTAGCGAGCTCGATGAGGTTGGATAGTGGAAGAAACCATGGAGATGATGATA GACTTTACGACGAGTACGCATATCGAACGAGTGTGAGCATCGGAGGCCATCTCTTCAAGGGAATCCTGTACGACCAAGGTCCCCAAAACGAACGACGACA AAGCTCCGCCGTGGCTGGAGTTGTTGTAGCTCCACCTCCTCCCTTTTCATGCACTTTCCCTCTTCCCACTCTCCATACGGAATAA
AA sequence Show only first row Show all	>Lus10017492 pacid=23163101 polypeptide=Lus10017492 locus=Lus10017492.g ID=Lus10017492.BGIv1.0 annot-version=v1.0 MMNGGGETSVGSMRGGGGGGAAGRRCEDCGNQAKRECRYWRCRRCCNRRKLECQTHVSSTWVPTSLRRLQQATARGSSATHLPTSQQLHHHHNPSDMESD DFPREVTSMATFHCCKVASSMRLDSGRNHGDDDRLYDEYAYRTSVSIGGHLFKGILYDQGPQNERRQSSAVAGVVVAPPPPFSCTFPLPTLHTE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21400		SRS3	SHI-related sequence3 (.1)		Lus10017492 [exp]	0	1
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Lus10000469 [exp]	5.5	0.8872
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Lus10029226 [exp]	7.6	0.8861
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10036075 [exp]	10.4	0.8381
					Lus10005241 [exp]	16.7	0.8252
AT5G37990			S-adenosyl-L-methionine-depend...		Lus10028500 [exp]	19.0	0.8369
AT5G59540			2-oxoglutarate (2OG) and Fe(II...		Lus10000612 [exp]	19.0	0.7474
AT4G10310		ATHKT1, HKT1	high-affinity K+ transporter 1...		Lus10030616 [exp]	29.7	0.8250
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10029430 [exp]	38.6	0.8229
AT5G52790			CBS domain-containing protein ...		Lus10039289 [exp]	45.3	0.8048
AT2G36800		UGT73C5, DOGT1	UDP-GLUCOSYL TRANSFERASE 73C5,...		Lus10022627 [exp]	46.2	0.7933

Compare expression of checked genes

Lus10017492 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.