Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21385 368 / 4e-127 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028792 [exp] 593 / 0 AT2G21385 375 / 2e-130 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G160800 [exp] 407 / 3e-142 AT2G21385 459 / 1e-163 unknown protein Potri.009G121902 [exp] 112 / 1e-30 AT2G21385 130 / 6e-39 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017494 pacid=23163193 polypeptide=Lus10017494 locus=Lus10017494.g ID=Lus10017494.BGIv1.0 annot-version=v1.0 ATGGCTGTTCCTCCTCCTACGCTAGTTTCCGGCGCCGCAATGTTGCTACATTCACCGCCTCTTCTCTCATCTTCCGGCTATTCCGCTCATTATTTCTTGG CGTCTAGCTCCACGAGAACGATCCAAACATGGAGAATTAAGGCTTTCACTGCGCCAAGAATGAAGTTCGTTTTCCCCACCAAGACGCCAGTACAATCTAA GAGAAGGAGAACTTTGATATGTGCAGTCGATCAAAATGCAGAAGCAGAATTCAAAAAGACAGTTGGACTGGATTTTCTTATAGAAACACTGAGGGTAGCA AATCCAGCAGAACTTCCCAAGATTGTTGCTGATAACATCCTTGCTTTCGATACGGGATTCTGGATTCGACTTGCTGCAAGAGCAGACACATGCAAATCAG AAGATGATAAAGCATGGATTTCGACTTGGTTAATTATTGTGTTTCGTGGCATTTCAGAGTTTGGCATCATTTTTAAAAAAAAAGATTACGAGGAACTGGC GACAACCTTAATGGGCATGGTTGATCGTTTCGTCCATAAAACCAATGAAACGATCGATTCATCTACAGATGTTCTCAAGGATATATTGAAACCAGTAGTT GATCCAGAGGAAGAGGTAACATGGCCACCAAAAGACCCCCAAGCCCTGGAGCTTATGAAGAAAGTGATAATCCAAAGAGAGCAAGAGGGAGAACTAAATG AAGGATTCCTTTCTGAAGTCAATGCACAGCTCAGAAATGCCGAAGAAGATGCCGAAAAGCCAGGGCTCGTGGTTATGCTGCAAAAGGTCCTACAATACTA TGCATCTGCATCTCTTTCCAGACGTAGCTATGCCAAGAAAGGAAACAAGATTTTGAAGGACGAGCAGTTCCTTGAGACCATAATCAAAGCTCCCGAGGAA GAGTGGAACAGGCTGTTAATCGATGGATTGACCGTTGCGAAAGGTGAAATCACTCCAGAGGAACTCTACGCAGTCATCAAGAAACGAGTCGAACGGGTGA TGATTCGAACGGAAGGAGGGTCGTACCAGCAGCGGATTCTGGGCGAGTATCTAAAGAACATCCAATCTCGAGCTGAGGAGATTGTCAAAGTTCTTCAAAG TCAGACGTAA
AA sequence Show only first row Show all	>Lus10017494 pacid=23163193 polypeptide=Lus10017494 locus=Lus10017494.g ID=Lus10017494.BGIv1.0 annot-version=v1.0 MAVPPPTLVSGAAMLLHSPPLLSSSGYSAHYFLASSSTRTIQTWRIKAFTAPRMKFVFPTKTPVQSKRRRTLICAVDQNAEAEFKKTVGLDFLIETLRVA NPAELPKIVADNILAFDTGFWIRLAARADTCKSEDDKAWISTWLIIVFRGISEFGIIFKKKDYEELATTLMGMVDRFVHKTNETIDSSTDVLKDILKPVV DPEEEVTWPPKDPQALELMKKVIIQREQEGELNEGFLSEVNAQLRNAEEDAEKPGLVVMLQKVLQYYASASLSRRSYAKKGNKILKDEQFLETIIKAPEE EWNRLLIDGLTVAKGEITPEELYAVIKKRVERVMIRTEGGSYQQRILGEYLKNIQSRAEEIVKVLQSQT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21385			unknown protein		Lus10017494 [exp]	0	1
AT4G32320		APX6	ascorbate peroxidase 6 (.1)		Lus10002916 [exp]	1.4	0.9745
AT3G13120			Ribosomal protein S10p/S20e fa...		Lus10016604 [exp]	4.0	0.9664
AT5G14320		EMB3137	EMBRYO DEFECTIVE 3137, Ribosom...		Lus10018192 [exp]	5.9	0.9582
AT1G62780			unknown protein		Lus10032229 [exp]	6.0	0.9470
AT1G71720		PDE338	PIGMENT DEFECTIVE 338, Nucleic...		Lus10028698 [exp]	7.1	0.9519
AT2G04360			unknown protein		Lus10012308 [exp]	7.1	0.9413
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Lus10038770 [exp]	8.3	0.9627
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Lus10005553 [exp]	8.5	0.9604
AT4G20760			NAD(P)-binding Rossmann-fold s...		Lus10038343 [exp]	8.7	0.9481
AT1G79850		PDE347, CS17, P...	PLASTID RIBOSOMAL SMALL SUBUNI...		Lus10035863 [exp]	10.8	0.9502

Compare expression of checked genes

Lus10017494 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.