Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75540 194 / 5e-61 CO LHUS, AtBBX21, STH2 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) AT4G39070 180 / 9e-57 CO B-box zinc finger family protein (.1) AT1G78600 138 / 8e-40 CO BBX22, DBB3, STH3, LZF1 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) AT1G06040 127 / 8e-37 CO BBX24, STO SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) AT2G31380 122 / 3e-34 CO STH salt tolerance homologue (.1) AT4G10240 115 / 1e-32 CO B-box zinc finger family protein (.1) AT4G38960 99 / 1e-25 CO B-box type zinc finger family protein (.1.2.3) AT2G21320 98 / 1e-25 CO B-box zinc finger family protein (.1) AT2G24790 80 / 3e-18 CO COL3, ATCOL3 CONSTANS-like 3 (.1.2) AT5G15850 82 / 4e-18 CO COL1, ATCOL1 CONSTANS-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028791 [exp] 377 / 1e-134 AT1G75540 206 / 9e-66 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) Lus10042498 [exp] 137 / 3e-39 AT1G78600 274 / 1e-91 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) Lus10038147 [exp] 137 / 4e-39 AT1G78600 281 / 2e-94 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) Lus10025579 [exp] 125 / 3e-35 AT1G06040 297 / 2e-102 SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) Lus10027041 [exp] 125 / 3e-35 AT1G06040 298 / 1e-102 SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) Lus10031087 [exp] 93 / 3e-23 AT4G38960 229 / 5e-77 B-box type zinc finger family protein (.1.2.3) Lus10035472 [exp] 93 / 4e-23 AT4G38960 229 / 4e-77 B-box type zinc finger family protein (.1.2.3) Lus10018076 [exp] 89 / 7e-22 AT4G38960 215 / 6e-72 B-box type zinc finger family protein (.1.2.3) Lus10010629 [exp] 86 / 6e-19 AT3G54350 285 / 5e-83 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G161000 [exp] 230 / 9e-77 AT4G39070 192 / 6e-62 B-box zinc finger family protein (.1) Potri.009G122000 [exp] 205 / 9e-67 AT4G39070 202 / 1e-65 B-box zinc finger family protein (.1) Potri.002G028200 [exp] 206 / 5e-66 AT1G75540 252 / 2e-82 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) Potri.005G234500 [exp] 188 / 4e-59 AT1G75540 185 / 2e-56 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) Potri.011G105400 [exp] 135 / 1e-38 AT1G78600 284 / 1e-95 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) Potri.001G384000 [exp] 134 / 3e-38 AT1G78600 284 / 1e-95 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) Potri.017G028300 [exp] 132 / 3e-38 AT2G31380 273 / 4e-93 salt tolerance homologue (.1) Potri.017G028301 [exp] 132 / 3e-38 AT1G06040 274 / 3e-93 SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) Potri.007G130100 [exp] 129 / 5e-37 AT1G06040 264 / 1e-89 SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) Potri.004G162600 [exp] 99 / 3e-25 AT4G38960 248 / 1e-84 B-box type zinc finger family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00643 [flax] [poplar] zf-B_box B-box zinc finger
Representative CDS sequence Show only first row Show all	>Lus10017495 pacid=23163210 polypeptide=Lus10017495 locus=Lus10017495.g ID=Lus10017495.BGIv1.0 annot-version=v1.0 ATGAAGATCAGGTGCGATGTTTGTGACGGATCGGAGGCCACCGTCTACTGCACCGCCGACGAGGCTGCTCTGTGTGCAAGTTGTGACCGCAGAGTTCACC ATGCCAATAAACTCGCCGGGAACCACCACCGCTTTTCTCTGCTTCACCCTTCCTTCCAAGATGCACCCCTCTGCGATATCTGCCAGGAGAAGAGAGCATT CCTGTTCTGCCACGAAGACAGAGCCATCCTCTGCAGAGAATGCGACGTCCCAATCCACTCTGCCAACGAACACACACAGCGTCACTCCCGCTTTCTCCTC ACCGGTGTCAAGCTCTCCGCCTTTTCCGCTCACTACGACCCCACCGCCACCACCGCCAAGATCATTAATACTTCTTCCAATACAGCTGGCAGCAGCTGTT GTAGGAGCAGCTCCACACCGTCACAGGCGCAGCCGCCGCAGCAGCCAGCTGTGACTTATTCTAATAAAAGGCGCTTACAGTGGGACCAGGGAACTTCTCC GGGGTCCTACAGCGTGGACGAGAGCGCTCACATCAGCTACAGCGGCGACACCACCGGGTCCAGCATCTCCGAGTACTTGGATACTCTTCCGGGTTGGCGG GTCGACGACTTTCTTGACCCGGCTGCTGGGAAGTACAGTAGTGACTTCTGGACGACGCCGTATATGTGA
AA sequence Show only first row Show all	>Lus10017495 pacid=23163210 polypeptide=Lus10017495 locus=Lus10017495.g ID=Lus10017495.BGIv1.0 annot-version=v1.0 MKIRCDVCDGSEATVYCTADEAALCASCDRRVHHANKLAGNHHRFSLLHPSFQDAPLCDICQEKRAFLFCHEDRAILCRECDVPIHSANEHTQRHSRFLL TGVKLSAFSAHYDPTATTAKIINTSSNTAGSSCCRSSSTPSQAQPPQQPAVTYSNKRRLQWDQGTSPGSYSVDESAHISYSGDTTGSSISEYLDTLPGWR VDDFLDPAAGKYSSDFWTTPYM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75540	CO	LHUS, AtBBX21, ...	long hypocotyl under shade, B-...		Lus10017495 [exp]	0	1
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Lus10020721 [exp]	2.0	0.7506
AT1G33811			GDSL-like Lipase/Acylhydrolase...		Lus10000893 [exp]	3.9	0.8166
AT2G31305		INH3	inhibitor-3 (.1)		Lus10022410 [exp]	7.3	0.7217
AT3G54030			Protein kinase protein with te...		Lus10027743 [exp]	10.4	0.7538
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Lus10020236 [exp]	10.5	0.7049
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Lus10001789 [exp]	10.9	0.7744
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10041179 [exp]	14.3	0.7359
AT4G37340		CYP81D3	"cytochrome P450, family 81, s...		Lus10018712 [exp]	22.4	0.6292
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10010795 [exp]	26.0	0.6490
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10012056 [exp]	28.1	0.6511

Compare expression of checked genes

Lus10017495 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.