Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39050 1055 / 0 Kinesin motor family protein (.1) AT2G21380 932 / 0 Kinesin motor family protein (.1) AT3G12020 483 / 3e-155 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G21730 480 / 9e-155 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G06670 459 / 7e-146 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G10180 230 / 4e-62 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G59540 203 / 4e-54 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G24170 190 / 2e-49 ATP binding microtubule motor family protein (.1) AT2G21300 181 / 1e-46 ATP binding microtubule motor family protein (.1.2) AT4G38950 176 / 3e-45 ATP binding microtubule motor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017969 [exp] 1328 / 0 AT4G39050 1517 / 0.0 Kinesin motor family protein (.1) Lus10028790 [exp] 1297 / 0 AT4G39050 1242 / 0.0 Kinesin motor family protein (.1) Lus10041958 [exp] 1009 / 0 AT4G39050 1202 / 0.0 Kinesin motor family protein (.1) Lus10016236 [exp] 513 / 7e-166 AT3G12020 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10029307 [exp] 498 / 2e-160 AT3G12020 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10018145 [exp] 498 / 1e-158 AT1G21730 1033 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10025688 [exp] 496 / 2e-158 AT1G21730 1042 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10010441 [exp] 227 / 4e-61 AT3G10180 1214 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10012103 [exp] 225 / 3e-60 AT3G10180 1271 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G122100 [exp] 1219 / 0 AT4G39050 1379 / 0.0 Kinesin motor family protein (.1) Potri.004G161100 [exp] 1205 / 0 AT4G39050 1411 / 0.0 Kinesin motor family protein (.1) Potri.016G060400 [exp] 582 / 0 AT3G12020 1281 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G194900 [exp] 573 / 0 AT3G12020 1278 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G081300 [exp] 516 / 7e-166 AT1G21730 1063 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G040700 [exp] 235 / 1e-63 AT3G10180 1336 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G013300 [exp] 202 / 8e-54 AT1G59540 885 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G027600 [exp] 192 / 3e-50 AT2G21300 722 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.006G136600 [exp] 186 / 3e-48 AT3G43210 1250 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Potri.007G014800 [exp] 179 / 4e-46 AT5G66310 868 / 0.0 ATP binding microtubule motor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10017496 pacid=23163160 polypeptide=Lus10017496 locus=Lus10017496.g ID=Lus10017496.BGIv1.0 annot-version=v1.0 ATGGCATCTTCCTCCCGAGCAAGGAGCAGCTCACCGTTCTCATACCGCAAGTCATCCAGTCCTTACTCTTCGACTTCCTCCACTTCGTCTTACATGAGCG GCAGCAACCGTCTCATTCCGCGTTCCAGCTCCTCATCGGCTTCTTCTTACTTAAATAATTCCTGCGTTGGAGGAGGAGGAGGAGGTTACGGTGCTGGATC CATGACTCCTAGTCGGTCGCAGTCGGATTCAGTGTACTTAGGCGGTAGCTCGCGCGGTGGTTATGGAAATCGTACGCCGGTTGGTTACGAGGAGCTGGTT GCGGAGCCGGTTGATGCTCCGAGGAGTGGTGAGAGTATATCGGTGACGATTCGGTTTCGGCCGTTGAGCGAGAGGGAGTTTCAGAGAGGAGATGAAATTG CGTGGTACGCCGACGGAGATAAGATCGTTAGGAATGAGTATAATCCAGCTACGGCGTACGCATTTGGAACGGTGTTTGCTTATGGTGTCACAAGTAGTGG AAAGACATTTACTATGCATGGAGATCAAAGTGCTCCTGGTATTATACCTTTGGCTATAAAGGATGTTTTCAGCATGATCCAAGACGTTATCAATGATTTA CTTGATCCAACGGGACAGAATTTGCGAGTTAGAGAAGATGCACAGGGTACTTACGTCGAGGGTATAAAGGAAGAAGTTGTTTTGTCTCCAGGACATGCAT TGTCTTTTATTGCTGCTGGAGAAGAACATCGCCACGTAGGTTCAAATAATTTCAATTTGTTCAGTAGCCGAAGTCACACCATATTCACACTGATGATTGA AAGCAGTGCTCATGGTGACGAGTATGACGGCGTGGTTTTCTCTCAACTTAACTTGATTGATCTTGCTGGATCTGAGAGCTCAAAAACAGAAACAACTGGG CTGAGGAGAAAAGAAGGATCTTACATTAACAAGAGTCTTCTTACTCTTGGCACTGTAATAGGAAAGCTGAGTGAAGGGAGGGCTTCACATGTTCCATATC GAGATTCCAAGCTCACCCGTCTTTTGCAATCCTCATTAAGTGGCCACGGACATGTTTCATTCGCTAGCAGGGCGAAGCGTGTGGAGATCTATGCCTCACG GAACAAGATCATTGATGAAAAGTCTCTAATTAAGAAGTATCAGAGAGAAATCTCAACTCTTAAAGAGGAACTTGATCAGTTAAGAAGTGGGATGCTTGTT GGTGTGAGCCACGAGGAGATTCTAACCTTAAAACAAAAGTTAGAAGAAGGACAAGTGAAGATGCAGTCCAGACTGGAAGAAGAGGAGGAAGCAAAGGCCG CTCTCATGAGTAGAATCCAGAGGTTAACCAAGCTAATTCTCGTCTCTACAAAGAATTCAATCCCTGGATTGGTTGATGTTTCTGCTCATCAGCGAAGTCT CTCAGATGATAAACTGGATATCCTGCGAGATGGCACTTTACTTTTGGACAACGAGCATAAAGATTCCCCATCTACTACTGCAATTTCATCAGATCTATCT CATGAGTCCAGGCATAACAGATCCTACAGCAAGCGGAATGAAGAATTTTCACCTGCCTGCAGCACGGTTACTGATTCTGCTGGTGAATATATCAATTCTT CAAAGTTGGCAACAAGTGGACTCTCTCAAGATCAGATGGATCTTCTAGTGGAGCAGGTCAAGATGCTTGCTGAAGAGATTGCATTCAGCTCAAGTTCCCT GAAGCGTCTAGTCGAGCAATCTGTCAATGATCCCGATAGCTCGAAAACTCAGATCCAGAACTTGGAACGTGACATCGAGGAAAAGAGAAAGCAAATGAGA GCTCTTGAACAACACATTATTGACAGTGGTGAGGCTTCAATTGCCAATGAATCATTAGCTGATATGCAGCAGATAAAATCAGCTGACAACCGCATACTCC AGGAGCAATTGCAGAAAAAGTGTTTGGAGAACAAGGAGTTAGAAGAGAAGGTGAATCTTCTTGAGCGTCGTTTGGCCTCAACGTCAGGCGACAAGTCATC GTTAACATCTGAGCAATCCATCCCTGAAGAATATGTTGATGAACTGAGGAAGAAAATTCAATCACAGGAGATAGCAAATGAAAAGCTGAAGATACAACAA GTTCAGCTTTCAGAGGAGAACAGTGGGCTACACGTACAGAAACAGAAGCTAGCTGAAGAAGCTTGTTACGCGAAGGAACTGGCATCTGCTGCAGCAGTCG AGCTGAAAAATCTAGCTGGTGAAATTACTAAGCTATCCTTGCACAACTCGAAATTAGAAAAAGAACTGCTAGCTGCTCGCGAGTCACTGCAGTATAGAGG TTCTGTTCCACAAAATGGTAGCAACCGTAGATATAATGATGGATCGAGATCAGGGAGGAAAGGGCGGTTATCTGGCCGGGTAAACGAGATGGCGCTACAC TCAGACGAGTTCGATGCATGGGACCTTGATCCCAATGACATGAAGATGGAATTACAGGCGAGGAAACTACGAGAAGCAGCCCTCGAGGCTGCCTTGGCCG AGAGAGAACTCATAGAAGATGAGTACAGGAAAAAAGCAGAAGAAGCAAAGCGTAGGGAAGAGTCTCTTGAAAATGACTTGGCAAACATGTGGGTACTTGT TGCTAAGTTGAAGAAGGAAGGAGGAAATGTCCCTGAGTTTATCACAGATGAGAGGCCGAATGACGTTAGATCTAACCACACAAGTGAGCCAGAATCGAAC GGGTCCGATCACGAAACAGCGTCCAAAGAAGGACAAGTTATTGATTGTCCAAAGCCTGCAGTTGAAGTTCCAAAGGAAGAGCCATTGGTTGTTCGTTTGA AGGCACGGATGCAAGAGATGAAGGAAAAGGAACTGAAACACTCCGGAAATGGAGATGCCAATTCGCACATCTGTAAAGTATGTTTCGAATCAGCAACCGC AGCAATTCTTCTTCCATGCCGACATTTTTGCTGTAAGCAGCACCTTTCAACCTTCTGTTTCACATAA
AA sequence Show only first row Show all	>Lus10017496 pacid=23163160 polypeptide=Lus10017496 locus=Lus10017496.g ID=Lus10017496.BGIv1.0 annot-version=v1.0 MASSSRARSSSPFSYRKSSSPYSSTSSTSSYMSGSNRLIPRSSSSSASSYLNNSCVGGGGGGYGAGSMTPSRSQSDSVYLGGSSRGGYGNRTPVGYEELV AEPVDAPRSGESISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATAYAFGTVFAYGVTSSGKTFTMHGDQSAPGIIPLAIKDVFSMIQDVINDL LDPTGQNLRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLFSSRSHTIFTLMIESSAHGDEYDGVVFSQLNLIDLAGSESSKTETTG LRRKEGSYINKSLLTLGTVIGKLSEGRASHVPYRDSKLTRLLQSSLSGHGHVSFASRAKRVEIYASRNKIIDEKSLIKKYQREISTLKEELDQLRSGMLV GVSHEEILTLKQKLEEGQVKMQSRLEEEEEAKAALMSRIQRLTKLILVSTKNSIPGLVDVSAHQRSLSDDKLDILRDGTLLLDNEHKDSPSTTAISSDLS HESRHNRSYSKRNEEFSPACSTVTDSAGEYINSSKLATSGLSQDQMDLLVEQVKMLAEEIAFSSSSLKRLVEQSVNDPDSSKTQIQNLERDIEEKRKQMR ALEQHIIDSGEASIANESLADMQQIKSADNRILQEQLQKKCLENKELEEKVNLLERRLASTSGDKSSLTSEQSIPEEYVDELRKKIQSQEIANEKLKIQQ VQLSEENSGLHVQKQKLAEEACYAKELASAAAVELKNLAGEITKLSLHNSKLEKELLAARESLQYRGSVPQNGSNRRYNDGSRSGRKGRLSGRVNEMALH SDEFDAWDLDPNDMKMELQARKLREAALEAALAERELIEDEYRKKAEEAKRREESLENDLANMWVLVAKLKKEGGNVPEFITDERPNDVRSNHTSEPESN GSDHETASKEGQVIDCPKPAVEVPKEEPLVVRLKARMQEMKEKELKHSGNGDANSHICKVCFESATAAILLPCRHFCCKQHLSTFCFT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39050			Kinesin motor family protein (...		Lus10017496 [exp]	0	1
AT2G23140			RING/U-box superfamily protein...		Lus10022919 [exp]	1.0	0.9146
AT3G54030			Protein kinase protein with te...		Lus10021112 [exp]	1.4	0.9126
AT1G66830			Leucine-rich repeat protein ki...		Lus10033569 [exp]	2.8	0.8687
AT2G40820			unknown protein		Lus10038998 [exp]	3.0	0.8907
AT2G40820			unknown protein		Lus10027293 [exp]	4.0	0.8862
AT3G26935			DHHC-type zinc finger family p...		Lus10000146 [exp]	4.5	0.8715
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Lus10018731 [exp]	4.9	0.8706
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Lus10024805 [exp]	6.5	0.8690
AT5G58160			actin binding (.1)		Lus10024450 [exp]	7.7	0.8274
AT4G39050			Kinesin motor family protein (...		Lus10028790 [exp]	10.6	0.8343

Compare expression of checked genes

Lus10017496 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.