Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21340 570 / 0 MATE efflux family protein (.1.2) AT4G39030 509 / 2e-176 SCORD3, SID1, EDS5 SALICYLIC ACID INDUCTION DEFICIENT 1, susceptible to coronatine-deficient Pst DC3000 3, ENHANCED DISEASE SUSCEPTIBILITY 5, MATE efflux family protein (.1) AT2G38330 96 / 1e-20 MATE efflux family protein (.1) AT4G38380 79 / 3e-15 MATE efflux family protein (.1) AT3G08040 77 / 1e-14 ATFRD3, MAN1, FRD3 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) AT1G51340 69 / 3e-12 MATE efflux family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018080 [exp] 564 / 0 AT2G21340 667 / 0.0 MATE efflux family protein (.1.2) Lus10017964 [exp] 551 / 0 AT2G21340 622 / 0.0 MATE efflux family protein (.1.2) Lus10041955 [exp] 536 / 0 AT2G21340 598 / 0.0 MATE efflux family protein (.1.2) Lus10042074 [exp] 514 / 5e-179 AT2G21340 603 / 0.0 MATE efflux family protein (.1.2) Lus10012227 [exp] 81 / 8e-16 AT2G38330 608 / 0.0 MATE efflux family protein (.1) Lus10023943 [exp] 77 / 9e-15 AT4G38380 593 / 0.0 MATE efflux family protein (.1) Lus10026829 [exp] 77 / 9e-15 AT4G38380 535 / 0.0 MATE efflux family protein (.1) Lus10029517 [exp] 74 / 2e-13 AT3G08040 596 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Lus10039609 [exp] 73 / 2e-13 AT3G08040 619 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G122900 [exp] 618 / 0 AT2G21340 684 / 0.0 MATE efflux family protein (.1.2) Potri.009G122600 [exp] 580 / 0 AT2G21340 646 / 0.0 MATE efflux family protein (.1.2) Potri.016G126000 [exp] 87 / 6e-18 AT2G38330 499 / 9e-173 MATE efflux family protein (.1) Potri.009G053700 [exp] 86 / 1e-17 AT1G51340 634 / 0.0 MATE efflux family protein (.1.2) Potri.016G053600 [exp] 73 / 2e-13 AT1G51340 543 / 0.0 MATE efflux family protein (.1.2) Potri.001G266900 [exp] 72 / 3e-13 AT3G08040 598 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Potri.005G102800 [exp] 72 / 3e-13 AT4G38380 547 / 0.0 MATE efflux family protein (.1) Potri.004G183600 [exp] 69 / 4e-12 AT4G38380 604 / 0.0 MATE efflux family protein (.1) Potri.009G143400 [exp] 68 / 1e-11 AT4G38380 626 / 0.0 MATE efflux family protein (.1) Potri.009G061100 [exp] 67 / 1e-11 AT3G08040 566 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10017498 pacid=23163173 polypeptide=Lus10017498 locus=Lus10017498.g ID=Lus10017498.BGIv1.0 annot-version=v1.0 ATGCAGATCAGAACCATAGCTGCTAAGTCTCCTTCATTGCTGTCCTTACAAAACCCATATTCCCCCAACCACAAGCTTCCACTGGGTTCACTTGGATTCA GGACTCAACAACAAGAAAATGGGCATCTTTCCTTCACTCAGAGTTGCAAGTTGTCCAGACAAAAGGTTGGGAAAAGGTTACTGCTGTCACCACCAAACTG TATTGTTGGCTCAAGCATCTCCAAGGAGTCTGGATCAGGTGGTGATGAGTCAATCAATGGGGAAGAAGAAGAAGGGATTCAACAAAGAGGGTTTGAAGGG CAGAGTTTGTGGAAACAGTTGAAGCAGATAGTGGAGTTCTCTGGACCTGCAATGATCATTTGGTTGTCTGCTCCAACTATGAGCCTTGTTGACACTGCTG TTATTGGTCAGGCTAGCTCCATTGAGCTTGCTGCTTTAGGGCCTGCAACTGTGCTGTGTGACTATGTGAGACTTGTGTTTGTGTTCCTGTCTGTTTCCAC TTCAAACATTATTGCTGTTTCTCTTGCCAGACAGGACAAAGAAGACGTTCAGCACCAGATATCAATCCTTATGTTTGTTGGATTGACTTGTGGTCTCTTG CTGCTTTGCTTCATCAAGTTTTTTGGTGCATCTGCTCTTACTGCTTTTGCAGGGCCTAAGAATTCACATATAGTTGGTGTATCAAATGGATACATTCAGA TTCGAGCCTTGGCATGGCCTGCAGTGCTTGTAGGGTTGGTGGCTCAAGGTGCAAGCCTTGGCATGAAAGACTCATTGAGACCTATGAAAGCTTTGGCAAT AGGAGGTGTCCTGAATGCCATAGGTGATGTGGTTCTCTGCAACATTTTAGGGTATGGAATTCGCGGTGCTGCTTTCGCTGCAATCATCTCGCAAGTTGTT GCAGCTTATATGATGATCGATGGCCTAAACAAGAAAGGATACAATGCCTTTGACATAAAGGTTCCTAAGCTCGACGAACTCATTACCATACTCCGGCTCG CTACTCCAGTCTTCATGACAACAATGTCAAAGATGGCATTCTACTCGGTGATGATATATTTCGCAACGTCGATGGGGACATACCCTGTAGCAGCTCACCA GGTCATGGTCCAAATCTTCACAATGTGTGGCGTATGTGGCGAGCCACTCTCGCAGACTTCTCAATCGTTCATGCCCGAGTTGATCTATGGTGTCAACAGA AACTTGACGAAGGCTAGAAGTCTGCTCAAGTCCATAGTTTCACTTGGGGTGATAGTTGGTCTGGTTCTAGCCTCCATTGGGACCTTAGTTCCCTTGCTGT TCCCAAACATCTTCACTCAGGATCAGATGGTCATTCGTGAGATGCACAAGATAGTTGTACCTTACTTCATCGCGTTGGCCATCACGCCTTGCATTCAGAC CCTCGAGGGAACCTTGCTGGCTGGTAGAGACCTTAGATTCCTGAGCATGTCTATGACTAGCTGCTTCTCTTTAGGCGCCGTCGTGCTCATGCTTGTGAGC AGCAGAGGATATGGACTACTGGGCTGCTGGTTTGCGCTTGTGGGGTTCCAATGGGCACGGTTGTTCCTGGCTCTTCGTCGGCTTCTTTCGGCCAATGGAA TGCTGTACTCGGATGATCAGAGCAGACACAAGCTAGAGAAGCCAAAAGCTGCTTAA
AA sequence Show only first row Show all	>Lus10017498 pacid=23163173 polypeptide=Lus10017498 locus=Lus10017498.g ID=Lus10017498.BGIv1.0 annot-version=v1.0 MQIRTIAAKSPSLLSLQNPYSPNHKLPLGSLGFRTQQQENGHLSFTQSCKLSRQKVGKRLLLSPPNCIVGSSISKESGSGGDESINGEEEEGIQQRGFEG QSLWKQLKQIVEFSGPAMIIWLSAPTMSLVDTAVIGQASSIELAALGPATVLCDYVRLVFVFLSVSTSNIIAVSLARQDKEDVQHQISILMFVGLTCGLL LLCFIKFFGASALTAFAGPKNSHIVGVSNGYIQIRALAWPAVLVGLVAQGASLGMKDSLRPMKALAIGGVLNAIGDVVLCNILGYGIRGAAFAAIISQVV AAYMMIDGLNKKGYNAFDIKVPKLDELITILRLATPVFMTTMSKMAFYSVMIYFATSMGTYPVAAHQVMVQIFTMCGVCGEPLSQTSQSFMPELIYGVNR NLTKARSLLKSIVSLGVIVGLVLASIGTLVPLLFPNIFTQDQMVIREMHKIVVPYFIALAITPCIQTLEGTLLAGRDLRFLSMSMTSCFSLGAVVLMLVS SRGYGLLGCWFALVGFQWARLFLALRRLLSANGMLYSDDQSRHKLEKPKAA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21340			MATE efflux family protein (.1...		Lus10017498 [exp]	0	1
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10034846 [exp]	4.9	0.8918
AT3G62390		TBL6	TRICHOME BIREFRINGENCE-LIKE 6 ...		Lus10002430 [exp]	6.2	0.8923
AT4G11030			AMP-dependent synthetase and l...		Lus10001830 [exp]	8.4	0.8863
AT5G47770		FPS1	farnesyl diphosphate synthase ...		Lus10006168 [exp]	9.9	0.9117
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Lus10004186 [exp]	15.5	0.8633
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10029803 [exp]	22.4	0.8896
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10038635 [exp]	24.1	0.8795
AT3G53850			Uncharacterised protein family...		Lus10024355 [exp]	26.9	0.8619
					Lus10012972 [exp]	31.7	0.8660
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10010509 [exp]	32.0	0.8787

Compare expression of checked genes

Lus10017498 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.