Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34640 657 / 0 ERG9, SQS1 squalene synthase 1 (.1) AT4G34650 612 / 0 SQS2 squalene synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028786 [exp] 805 / 0 AT4G34640 671 / 0.0 squalene synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G161200 [exp] 706 / 0 AT4G34640 659 / 0.0 squalene synthase 1 (.1) Potri.009G123100 [exp] 698 / 0 AT4G34640 639 / 0.0 squalene synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF00494 [flax] [poplar] SQS_PSY Squalene/phytoene synthase
Representative CDS sequence Show only first row Show all	>Lus10017499 pacid=23163155 polypeptide=Lus10017499 locus=Lus10017499.g ID=Lus10017499.BGIv1.0 annot-version=v1.0 ATGGGGAGTTTGGGAGCACTTCTGAAGCACCCAGATGACGTGTACCCGCTTCTGAAGCTGAAATTGGCTGCCAGGAGTGCGGAGAAGCAGATCCCACCAC ACCCTCACTGGGGATTCTGCTACACCATGCTTCTTAAGGTCTCTCGCAGCTTCGCTCTTGTCATTCAGCAGCTCGGCACTGAGCTCCGTGACGCTGTATG CATCTTCTACTTGGTCCTTCGAGCCCTTGATACAGTTGAGGATGATACGAGCATAGCAACAGAAGTAAAGGTGCCTATTCTAAACGATTTTCACCGTCAC ATATATGATCAGGAATGGCACTTCTCATGTGGCACGAAGGACTATAAAGTTCTCATGGACGAGTTTCACCATGTCTCAACTGCTTTCTTAGAGCTGGGGA GAGGCTATCAAGAGGCAATTGAGGATATCACTAAAAGAATGGGCGCTGGAATGGCAAAATTTATATTAAAAGAGGTGGAATCCGTTGATGATTATGACGA GTATTGCCACTATGTAGCTGGCCTTGTAGGGCTAGGCCTCTCAAAGCTTTTCCATGCTTCAGGAAAGGAAGATTTAGCACCTGACGATCTCTCCAATTCA ATGGGTTTATTTCTTCAGAAAACGAACATCATTCGAGATTATTTGGAAGATATAAACGAGATACCTAAGTCTCGCATGTTTTGGCCTCGTGAGATCTGGA GTAAATATGTCAACAAACTTGAGGACTTGAAATATGAAGAAAACTCAGTCAAGGCAGTGCAATGTTTGAATGATATGGTCACTAATGCTTTGATACATAT GGATGACTGTGTGAAGTACTTGTCTGCTCTGAGAGATCCTGCTATATTTCGGTTCTGTGCTATTCCTCAGATAATGGCTATTGGAACCCTGGCAATGTGC TATAACAATATTGAAGTCTTTAGAGGCGTAGTAAAGATGAGGCGTGGTCTTACTGCTAAAGTAATCAACGACACTAAAACCATGGCCGATGTTTATGGTG CTTTCTATGACTTCTCTTGTATGCTGAAGTCCAAGGTTGATAAGAATGATCCCAATGCAACAAAAACACTAACCAAACTGGAAGCCATTCAAGCGACTTG CAGAGGATCTGGACTCCTCAATAAAAGGAAATCGTACATTTTGGAGAGCAAGAATCAATACAATCGCTTCCTGATTGTCCTGCTTGTTATTATCCTGGCT ATCATATTTGCTCGTCTCAACAGCACTCGCTCAAGTAACTAA
AA sequence Show only first row Show all	>Lus10017499 pacid=23163155 polypeptide=Lus10017499 locus=Lus10017499.g ID=Lus10017499.BGIv1.0 annot-version=v1.0 MGSLGALLKHPDDVYPLLKLKLAARSAEKQIPPHPHWGFCYTMLLKVSRSFALVIQQLGTELRDAVCIFYLVLRALDTVEDDTSIATEVKVPILNDFHRH IYDQEWHFSCGTKDYKVLMDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFILKEVESVDDYDEYCHYVAGLVGLGLSKLFHASGKEDLAPDDLSNS MGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYVNKLEDLKYEENSVKAVQCLNDMVTNALIHMDDCVKYLSALRDPAIFRFCAIPQIMAIGTLAMC YNNIEVFRGVVKMRRGLTAKVINDTKTMADVYGAFYDFSCMLKSKVDKNDPNATKTLTKLEAIQATCRGSGLLNKRKSYILESKNQYNRFLIVLLVIILA IIFARLNSTRSSN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34640		ERG9, SQS1	squalene synthase 1 (.1)		Lus10017499 [exp]	0	1
AT1G31770		ABCG14	ATP-binding cassette G14, ATP-...		Lus10037283 [exp]	3.5	0.9418
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10010936 [exp]	4.9	0.9510
AT5G11420			Protein of unknown function, D...		Lus10005474 [exp]	5.5	0.9443
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030460 [exp]	6.0	0.9399
AT3G48660			Protein of unknown function (D...		Lus10003120 [exp]	7.1	0.9520
AT3G59710			NAD(P)-binding Rossmann-fold s...		Lus10034835 [exp]	8.1	0.9516
AT3G53250			SAUR-like auxin-responsive pro...		Lus10009219 [exp]	10.6	0.9336
AT1G43800			Plant stearoyl-acyl-carrier-pr...		Lus10018926 [exp]	11.3	0.9453
AT1G43800			Plant stearoyl-acyl-carrier-pr...		Lus10028627 [exp]	11.8	0.9251
AT1G09040			unknown protein		Lus10006519 [exp]	12.3	0.9012

Compare expression of checked genes

Lus10017499 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.