Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34660 502 / 2e-179 SH3 domain-containing protein (.1.2.3) AT4G18060 320 / 4e-108 SH3 domain-containing protein (.1) AT1G31440 218 / 4e-67 SH3 domain-containing protein (.1) AT4G39020 120 / 2e-32 SH3 domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028784 [exp] 624 / 0 AT4G34660 563 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10017501 [exp] 568 / 0 AT4G34660 598 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10028783 [exp] 563 / 0 AT4G34660 596 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10028785 [exp] 389 / 9e-137 AT4G34660 338 / 2e-117 SH3 domain-containing protein (.1.2.3) Lus10004584 [exp] 326 / 3e-110 AT4G18060 549 / 0.0 SH3 domain-containing protein (.1) Lus10015253 [exp] 323 / 5e-109 AT4G18060 540 / 0.0 SH3 domain-containing protein (.1) Lus10011975 [exp] 323 / 6e-109 AT4G18060 548 / 0.0 SH3 domain-containing protein (.1) Lus10033292 [exp] 259 / 3e-83 AT1G31440 432 / 3e-150 SH3 domain-containing protein (.1) Lus10034755 [exp] 242 / 6e-76 AT1G31440 397 / 1e-135 SH3 domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G123200 [exp] 541 / 0 AT4G34660 566 / 0.0 SH3 domain-containing protein (.1.2.3) Potri.004G161300 [exp] 526 / 0 AT4G34660 515 / 0.0 SH3 domain-containing protein (.1.2.3) Potri.001G354700 [exp] 327 / 2e-110 AT4G18060 538 / 0.0 SH3 domain-containing protein (.1) Potri.011G077500 [exp] 317 / 7e-107 AT4G18060 514 / 0.0 SH3 domain-containing protein (.1) Potri.001G128800 [exp] 293 / 7e-97 AT4G34660 362 / 6e-124 SH3 domain-containing protein (.1.2.3) Potri.003G105200 [exp] 283 / 4e-93 AT4G34660 325 / 1e-109 SH3 domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0145 [flax] [poplar] Golgi-transport PF03114 [flax] [poplar] BAR BAR domain CL0010 [flax] [poplar] SH3 PF00018 [flax] [poplar] SH3_1 SH3 domain
Representative CDS sequence Show only first row Show all	>Lus10017500 pacid=23163166 polypeptide=Lus10017500 locus=Lus10017500.g ID=Lus10017500.BGIv1.0 annot-version=v1.0 ATGGAAGCCATTAGAAAGCAGGCCACACGGTTTCGAGAACAGGTTGCCAAGCAACAACAGGCTGTTCTGAAGCAATTTGGTGGTAGTGGCTATGGAGGTT CGGACGGTGTTGTCACTGACGAGGCTGAACTTCATCAGCATCAGAGACTCGAGAAGCTTTACATATCGACACGAGCTGCCAAGCATTTCCAACGGGATAT TGTTCGTGGAACAGAAGGATATGTCGTTACCGGATCGAAACAAGTTGAAATAGGAACCAAGTTATCAGAGGATAGTCGGAAGTATGGCTCTGGAAACACT TGTACTAGTGGCAATACTTTGTCAAGGGCTGCACTCAGTTATGGACGTGCTCGTGCTCAGATGGAGAAGGAGCGGGGCAATATGTTGAAAGCTCTTGGTA CACAGGTTGCGGAGCCACTAAGAGCAATGGTCATGGGCGCACCACTGGAAGATGCTCGGCATCTTGCTCAACGTTACGACAGGATGAGACAAGATGTAGA AGCTCAGGCCATTGAAGTTTCGAAACGTCAAGCTAAAGCAAAGGAAATGCCAGGCCATCCCGAGGTTACCACGAAATGGGAAGCTGCAGAGTTGAAGCTT CGAGATATGAAAGCTAACATGGATGTCCTGGGTAAGGAAGCAGCTTCAGCAATGGCTGCTGTCGAAGCTCAACAGCAGAGACTAACTCTCCAGAGGCTTA TAGCTATGGTTGAGGCAGAAAGAAATTACCACCAGAGGGTTCTTCAGATACTAGATCAGCTAGAAACTGAGATGATATCAGAACAGCAAAGGATTGAAGC ACCTCCGACACAAGTTGAGAACGAGATGCCACCTCCACCTCCATATGAAGAAGTAATAAACACTGTTTATGCCTCTGAAACACCAAACGGCTCAACAGAC AATATGGGATACTTTTTGGGGGAGGTTATGAATACTTATAATGCTGAAACTGATGTGGAGCTGTCCTTGTCTGCTGGTGACTATGTTGTGGTCCGCAAGG TGACGAACAATGGATGGGCAGAAGGTGAATGCAAAGGGAAAGCAGGTTGGTTCCCGTTCGGATACATCGACCGAAGGGATCGAGTTCTAGCAAGCAAAAT TGCACAAGTGTTTTAG
AA sequence Show only first row Show all	>Lus10017500 pacid=23163166 polypeptide=Lus10017500 locus=Lus10017500.g ID=Lus10017500.BGIv1.0 annot-version=v1.0 MEAIRKQATRFREQVAKQQQAVLKQFGGSGYGGSDGVVTDEAELHQHQRLEKLYISTRAAKHFQRDIVRGTEGYVVTGSKQVEIGTKLSEDSRKYGSGNT CTSGNTLSRAALSYGRARAQMEKERGNMLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQDVEAQAIEVSKRQAKAKEMPGHPEVTTKWEAAELKL RDMKANMDVLGKEAASAMAAVEAQQQRLTLQRLIAMVEAERNYHQRVLQILDQLETEMISEQQRIEAPPTQVENEMPPPPPYEEVINTVYASETPNGSTD NMGYFLGEVMNTYNAETDVELSLSAGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIDRRDRVLASKIAQVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34660			SH3 domain-containing protein ...		Lus10017500 [exp]	0	1
AT5G56260			Ribonuclease E inhibitor RraA/...		Lus10027126 [exp]	3.0	0.9073
AT4G14110		FUS7, EMB143, C...	FUSCA 7, EMBRYO DEFECTIVE 143,...		Lus10036164 [exp]	7.2	0.8851
AT1G15110		PSS1	phosphatidylserine synthase 1,...		Lus10034618 [exp]	11.6	0.8503
AT3G26090		ATRGS1, RGS1	REGULATOR OF G-PROTEIN SIGNALI...		Lus10011395 [exp]	13.0	0.8742
AT5G59590		UGT76E2	UDP-glucosyl transferase 76E2 ...		Lus10016460 [exp]	13.5	0.8844
AT1G78895			Reticulon family protein (.1)		Lus10034807 [exp]	18.2	0.8643
AT2G17290		ATCPK6, ATCDPK3...	calcium dependent protein kina...		Lus10013842 [exp]	21.3	0.8608
AT1G31120		KUP10	K+ uptake permease 10, K+ upta...		Lus10038362 [exp]	23.8	0.8666
AT1G16670			Protein kinase superfamily pro...		Lus10026503 [exp]	25.8	0.8812
AT5G59140			BTB/POZ domain-containing prot...		Lus10040746 [exp]	28.3	0.8563

Compare expression of checked genes

Lus10017500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.