Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34660 556 / 0 SH3 domain-containing protein (.1.2.3) AT4G18060 335 / 1e-113 SH3 domain-containing protein (.1) AT1G31440 227 / 2e-70 SH3 domain-containing protein (.1) AT4G39020 130 / 2e-36 SH3 domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028783 [exp] 667 / 0 AT4G34660 596 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10017500 [exp] 593 / 0 AT4G34660 569 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10028784 [exp] 589 / 0 AT4G34660 563 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10028785 [exp] 371 / 1e-129 AT4G34660 338 / 2e-117 SH3 domain-containing protein (.1.2.3) Lus10015253 [exp] 350 / 7e-120 AT4G18060 540 / 0.0 SH3 domain-containing protein (.1) Lus10004584 [exp] 347 / 1e-118 AT4G18060 549 / 0.0 SH3 domain-containing protein (.1) Lus10011975 [exp] 346 / 5e-118 AT4G18060 548 / 0.0 SH3 domain-containing protein (.1) Lus10033292 [exp] 280 / 3e-91 AT1G31440 432 / 3e-150 SH3 domain-containing protein (.1) Lus10034755 [exp] 262 / 1e-83 AT1G31440 397 / 1e-135 SH3 domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G123200 [exp] 602 / 0 AT4G34660 566 / 0.0 SH3 domain-containing protein (.1.2.3) Potri.004G161300 [exp] 586 / 0 AT4G34660 515 / 0.0 SH3 domain-containing protein (.1.2.3) Potri.001G354700 [exp] 342 / 1e-116 AT4G18060 538 / 0.0 SH3 domain-containing protein (.1) Potri.011G077500 [exp] 332 / 2e-112 AT4G18060 514 / 0.0 SH3 domain-containing protein (.1) Potri.001G128800 [exp] 308 / 5e-103 AT4G34660 362 / 6e-124 SH3 domain-containing protein (.1.2.3) Potri.003G105200 [exp] 290 / 5e-96 AT4G34660 325 / 1e-109 SH3 domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0145 [flax] [poplar] Golgi-transport PF03114 [flax] [poplar] BAR BAR domain CL0010 [flax] [poplar] SH3 PF00018 [flax] [poplar] SH3_1 SH3 domain
Representative CDS sequence Show only first row Show all	>Lus10017501 pacid=23163189 polypeptide=Lus10017501 locus=Lus10017501.g ID=Lus10017501.BGIv1.0 annot-version=v1.0 ATGGAAGCCATAAGAAAGCAGGCTACAAGGCTTCGAGAGCAGGTTGCCAAGCAACAACAGGCTGTGCTGAAGCAATTTGGTGGCAGTGGATATGGAGGCT CAGACGGTGTCTTTACTGACGAGGGTGAACTTCATCAGCATCAGAGACTTGAGAAGCTTTACATATCGACACGTGCTGGCAAGCACTTCCAAAGGGACAT TGTACGCGGCGTAGAAGGATACATTGTTACCGGATCGAAACAAGTTGAAATAGGAACAAAGTTATCAGAGGATAGTCGGAAATATGGCTCTGAGAACACA TGTACCAGTGGCAATACATTATCAAAGGCTGCACTCAATTATGGTCGTGCTCGTGCTCAGATGGAAAAGGAGCGGGGCAGTATGTTGAAAGCTTTCGGTA CACAGGTGGCCGAGCCTTTAAGAGCCATGGTTATGGGAGCTCCACTGGAAGATGCCCGACATCTTGCCCAACGTTATGACAGAATGAGACAAGAAGCAGA AGCTCAGGCCATTGAAGTTTCTAAACGCCAAGTGAAAGCAAGGGAAACGCCTGGACATCCGGAAGCTACCATGAAATTGGAAGCTGCAGAGTCAAAGCTT CAAGATTTGAAGGCGAACATGGATATCCTGGGGAAGGAAGCAAATGCTGCAATGGCAGCTGTTGAGGCTCAACAACAAAGATTAACTCTGCAGCGGCTTA TTGCTATGGTTGAAGCGGAAAGAAATTACCACCAAAGGGTGCTTCAGATACTTGATCAGCTCGAAACTGAGATGATATCAGAACGACAACGAATTGAAGC ACCACCCACGCCAGTTGAGAACAGCATGCCCCCACCCCCTGCGTATGAAGAAGTCAACGGTGTGTATGCCTCTCAGGCACAAAATGGTGCAACAGACAGT ATGGGATACTTCTTAGGGGAGGTTTTGAATCCTTATAATGCCGAAACCGGCGTTGAGCTGTCTTTGTCAGTTGGTGACTATGTTGTGGTCCGCAAGGTGA CGAACAATGGATGGGCAGAAGGTGAATGCAAAGGGAAAGCAGGTTGGTTCCCATTCGGTTACATTGAGAGAAGAGATCGAGTTCTGGCCAGCAAAATAGC TGAAGTGTTCTAG
AA sequence Show only first row Show all	>Lus10017501 pacid=23163189 polypeptide=Lus10017501 locus=Lus10017501.g ID=Lus10017501.BGIv1.0 annot-version=v1.0 MEAIRKQATRLREQVAKQQQAVLKQFGGSGYGGSDGVFTDEGELHQHQRLEKLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSENT CTSGNTLSKAALNYGRARAQMEKERGSMLKAFGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVSKRQVKARETPGHPEATMKLEAAESKL QDLKANMDILGKEANAAMAAVEAQQQRLTLQRLIAMVEAERNYHQRVLQILDQLETEMISERQRIEAPPTPVENSMPPPPAYEEVNGVYASQAQNGATDS MGYFLGEVLNPYNAETGVELSLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLASKIAEVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34660			SH3 domain-containing protein ...		Lus10017501 [exp]	0	1
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Lus10005450 [exp]	1.4	0.8358
AT5G46630			Clathrin adaptor complexes med...		Lus10040086 [exp]	1.7	0.8361
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10029689 [exp]	3.0	0.7822
AT1G78300		14-3-3OMEGA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10020940 [exp]	6.0	0.7658
AT4G29810		MK1, ATMKK2	MAP KINASE KINASE 1, MAP kinas...		Lus10027623 [exp]	6.0	0.7547
AT3G44200		IBO1, ATNEK6	"NIMA \(never in mitosis, gene...		Lus10013338 [exp]	6.3	0.7747
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Lus10004562 [exp]	7.2	0.7501
AT1G08370		DCP1, ATDCP1	decapping 1 (.1)		Lus10034186 [exp]	8.0	0.7377
AT2G23070			Protein kinase superfamily pro...		Lus10011526 [exp]	8.4	0.7479
AT1G12470			zinc ion binding (.1)		Lus10031618 [exp]	9.7	0.7286

Compare expression of checked genes

Lus10017501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.