Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41330 488 / 1e-170 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) AT3G09030 171 / 7e-48 BTB/POZ domain-containing protein (.1) AT4G30940 78 / 3e-15 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) AT2G24240 65 / 6e-11 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) AT5G55000 42 / 0.0006 FIP2 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028780 [exp] 825 / 0 AT5G41330 544 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Lus10032277 [exp] 686 / 0 AT5G41330 574 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Lus10024643 [exp] 684 / 0 AT5G41330 580 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Lus10004834 [exp] 107 / 7e-26 AT3G09030 283 / 4e-93 BTB/POZ domain-containing protein (.1) Lus10002501 [exp] 74 / 4e-14 AT2G38110 330 / 2e-109 glycerol-3-phosphate acyltransferase 6 (.1) Lus10021855 [exp] 72 / 4e-13 AT2G24240 742 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Lus10036274 [exp] 68 / 5e-12 AT2G24240 740 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Lus10038089 [exp] 50 / 6e-07 AT3G09030 144 / 7e-41 BTB/POZ domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G129300 [exp] 621 / 0 AT5G41330 579 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Potri.001G102300 [exp] 598 / 0 AT5G41330 568 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Potri.016G112900 [exp] 170 / 2e-47 AT3G09030 525 / 0.0 BTB/POZ domain-containing protein (.1) Potri.018G107600 [exp] 72 / 2e-13 AT2G24240 766 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Potri.006G185300 [exp] 71 / 4e-13 AT2G24240 773 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF02214 [flax] [poplar] BTB_2 BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Lus10017502 pacid=23163136 polypeptide=Lus10017502 locus=Lus10017502.g ID=Lus10017502.BGIv1.0 annot-version=v1.0 ATGGTTTCCCGTCGTCCAGAGGACGACACCACCAACCTCAATTTCTACAAAACCTTCAACCCTCAAATTTCCGACATCTTAAAAATCGACGTCGGCGGCC AAATCTTCCAGACAACTCGTCAGACTCTGCCTCTCGCCGGCCCCAAATCCTTCTTCTCCCAGCACCTCACTTCCCATCCTCCTCGTTTCATCGACAGAGA CCCAGAGCTTTTCTCCGTCCTACTTTCTCTCCTCCGAACCGGGAATCTCCCGTCCAAGGCCAAGCATTTCGGCATCGAGGATTTGATTGAAGAGTCCAGG TTCTATAACATCGAGCCCCTGTTAATCAATTCCTTAGCTCACCCTTCCCATTTTGATGCCTTCAACCTCGAAAGGTCTATGCTTTTGCCCCTCAACGGCC GGGACTCTCCTTCCGCCGTCGCCACGTCGGCACCGGAGGAAGGAACCCTGCACGTGTCTCACGGCAGCAAAATCACGTCGTTTGATTGGTCGCTACGGAA GAAAGCAACCATCTTGACTCAATTCACAGCGATCGATTCCCTATTAGCGATCTCCCCTTCTCTGGCAGCTGCAGGGGCTACCGATTTCTCCGGACTGCAG ATCCTCGACGTGAACAAAGGTTCCGTCAAGGAAACCCTAAATTGGGAAAACGTGACGAAATCCGGGTCCACGGTTCAGGCAATCGGGTCGTCTCCTGGCC GCCTTCTATTCTCGAGCTTCGAGTCTAGCCGGAGGAACTCCAATTGTATAATGGTCTACGATCTGAACACCTTCTCGCCGCTTACTCAGATCGGGCATTA CGAGATATTCGGTGCGGAGCTCGATTCTGCGATTCCGGCCACGAAGTTGAAATGGGTCGAGAGCTACAATGTGGTAATGGCATCTGGGTCTCACTCGGGT CCGTCGGGTAGATTAGGGAATGTCAAGCTGTGGGATATAAGATCCGGAGAAGTGGTTTGGGAGCTGAAGGAGAAAGTTGATTGCTTTGCTGATATTACTG TTTCGGATAGCCTGTCAGCCATCTTTAAAGTTGGGGAGAATTCAGGGGAAGTGTTCTATATGGATTTGAGGAAGTTGGAGGATTCTGATAACAAGTGGGT TTGTCTTGGCGATGAGTGGAAAATAACTACGAATGTGAAGAAGGAAGGGGTTGGTTGCAAGATTGAGGCTCATGGGAATCAAGTCTTCTGCAGCAAAGAT GGGAACATAGACCTGTGGTCTGAGATTATGATGGGCGGTTTGGGGACCGGTGATCGAATGTTGCCTGACCGGGTTTTGCGGAAGAATTTGATGGGGAGAG TGAAGGATATGGGAGGGGCTAAGGTGACTAATTTGGGGTTTGGGGGGAATAAAATGTTCGTGACTCGTAAAGACCAGCGATCTGTTGAAGTGTGGCAGAG TTCTGCTGCCAAGGGATTCTGA
AA sequence Show only first row Show all	>Lus10017502 pacid=23163136 polypeptide=Lus10017502 locus=Lus10017502.g ID=Lus10017502.BGIv1.0 annot-version=v1.0 MVSRRPEDDTTNLNFYKTFNPQISDILKIDVGGQIFQTTRQTLPLAGPKSFFSQHLTSHPPRFIDRDPELFSVLLSLLRTGNLPSKAKHFGIEDLIEESR FYNIEPLLINSLAHPSHFDAFNLERSMLLPLNGRDSPSAVATSAPEEGTLHVSHGSKITSFDWSLRKKATILTQFTAIDSLLAISPSLAAAGATDFSGLQ ILDVNKGSVKETLNWENVTKSGSTVQAIGSSPGRLLFSSFESSRRNSNCIMVYDLNTFSPLTQIGHYEIFGAELDSAIPATKLKWVESYNVVMASGSHSG PSGRLGNVKLWDIRSGEVVWELKEKVDCFADITVSDSLSAIFKVGENSGEVFYMDLRKLEDSDNKWVCLGDEWKITTNVKKEGVGCKIEAHGNQVFCSKD GNIDLWSEIMMGGLGTGDRMLPDRVLRKNLMGRVKDMGGAKVTNLGFGGNKMFVTRKDQRSVEVWQSSAAKGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10017502 [exp]	0	1
AT3G59920		ATGDI2	RAB GDP dissociation inhibitor...		Lus10008341 [exp]	1.4	0.8273
AT4G14380			unknown protein		Lus10021182 [exp]	6.6	0.8192
					Lus10017454 [exp]	8.2	0.7897
AT5G50460			secE/sec61-gamma protein trans...		Lus10035206 [exp]	9.2	0.7568
AT3G59920		ATGDI2	RAB GDP dissociation inhibitor...		Lus10027094 [exp]	9.9	0.8030
AT5G23340			RNI-like superfamily protein (...		Lus10040998 [exp]	10.7	0.7639
AT5G40250			RING/U-box superfamily protein...		Lus10014526 [exp]	21.0	0.7408
AT1G11360			Adenine nucleotide alpha hydro...		Lus10039730 [exp]	25.5	0.7012
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Lus10008512 [exp]	26.2	0.6924
AT1G12240		ATBETAFRUCT4, V...	VACUOLAR INVERTASE, Glycosyl h...		Lus10028922 [exp]	28.6	0.7608

Compare expression of checked genes

Lus10017502 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.