Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52430 158 / 7e-42 hydroxyproline-rich glycoprotein family protein (.1) AT1G63720 144 / 6e-38 unknown protein AT4G25620 117 / 1e-27 hydroxyproline-rich glycoprotein family protein (.1) AT1G76660 110 / 9e-26 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028779 [exp] 1176 / 0 AT5G52430 191 / 6e-54 hydroxyproline-rich glycoprotein family protein (.1) Lus10024642 [exp] 324 / 8e-104 AT5G52430 261 / 2e-82 hydroxyproline-rich glycoprotein family protein (.1) Lus10032276 [exp] 307 / 3e-97 AT5G52430 265 / 8e-84 hydroxyproline-rich glycoprotein family protein (.1) Lus10027498 [exp] 170 / 1e-44 AT5G52430 348 / 2e-113 hydroxyproline-rich glycoprotein family protein (.1) Lus10039253 [exp] 166 / 1e-43 AT5G52430 374 / 6e-125 hydroxyproline-rich glycoprotein family protein (.1) Lus10016050 [exp] 90 / 1e-18 AT1G76660 438 / 5e-152 unknown protein Lus10025171 [exp] 90 / 2e-18 AT1G76660 420 / 1e-141 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G102200 [exp] 238 / 2e-71 AT5G52430 232 / 2e-71 hydroxyproline-rich glycoprotein family protein (.1) Potri.003G129400 [exp] 228 / 2e-67 AT5G52430 193 / 1e-56 hydroxyproline-rich glycoprotein family protein (.1) Potri.012G144200 [exp] 204 / 9e-58 AT4G25620 382 / 2e-128 hydroxyproline-rich glycoprotein family protein (.1) Potri.002G001100 [exp] 107 / 2e-24 AT1G76660 487 / 1e-170 unknown protein Potri.005G260000 [exp] 100 / 4e-22 AT1G76660 453 / 7e-158 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017503 pacid=23163154 polypeptide=Lus10017503 locus=Lus10017503.g ID=Lus10017503.BGIv1.0 annot-version=v1.0 ATGAGACGATCAAACCATAGCAATGGAGGAAGAGAAGCTGTAGCTTCTAGAGCTCTTGTTCTCGTCAACAGCAACAACAGCGACAACGCCTTGGTTACTG TTAATGCCGCTGCTAACCGCATAGCCTTCGTCGACAATCGTCTTTCTCAGCCCTCCCCCGCCGCTGCTCAGAGGCGCAGGAAACGTATTGGACATGCAGT ATTTGTATCTGAATCTCAACCTCCTGGAAGTGGAAATGAAGCTAGTCCAGCTGAAACTGGTAACCAACCTGCTGCAGCTATGCTCCAGTTCATCGCACCT CCTTCCTCTCCTGCATCTTTCCTTCCATCAGAACCTCCTTCCTGCACACAATCGCCAGCTGGTTTAGTGTCTCTGTCTCCCAGTATGTATTCTCCAAGTG GACCTGCCTCCATTTTCTCCATTGGACCTTATGCCCATGAAACTCAGCTGGTTTCTCCACCGGCATTGTCAACTATCACCACTGATCCATCAACTGCTCC TTTCACTCCTCCGCCAGAGTCTTTTCGTCTTAATACCACAGCTTCCTCGCCCGAGGTGCCTTTTGCTAGGCTACTAGATCCCAGGTTCCAGAATGGTGAA GTTGGTCACAGATTCTCGTCATCACACAATGACTTCCCGCACTATCAGTTTCATCCTGGAAGCCCAGCAGGTCAGGTTATCTCACCTCGATCAGTCATTT CTGGATCAGGGACGTCATCTCCTTTCCCGGATGGCGAGTTTGCTGCTGTTGGGTTCCCCTTTATGGAGTTTCGTGTGGGTACTGATCCTCGGACTCAAGG ATCTGGAACTTTGACTCCAGACTCCAACTTTGTTCTAGATCAGCAGTCTTCTGATCTAGGTGCACTCCCGAATCTGGATGGTTGGCGTCAAAACAATCAA GCTGCTAACTGTCGGTTCTTTTTCGAGTTTACTGCTGGTGATCGTTTGACCCAGCTTGAGAAGGAGGTGGTCAAATTACCCAGCGAGCCTGCCCATGTTT CTGGCAATCCCGAGGAAGATCCTGTTGCTGTGAAGACAGATGGTGAGCAAGAGGTACCAACCCATTGTAGGCACCGGACCATAACCTTAGGTTGCGTCAA TGATTTTGACTTTGAAAATGCAGAGGGGGAAGAGCTTAGTAAGCTTGCTCCTGAGGACCGGGAATCACATCAAGGATCCGCTACATCAACTACAGACTCT GTAAGGCTAGCATCAAGCAACTTTGATGTAGACCGTAAGTCTTCTGATCTTGGTAAACTCCTTTTCCTGGATGGCGGACATCAGAACAATCAAGTTGGCA ACCATCGGCTCTTTTTCGAGTTAACTTCTGGCAACCATTTGACACAACCTGAAAGGGAAACGTTGAGTGGCACAAGTGAGAAAGCTTCGGATGTCGGGGG AGAGGATGAGGAGCAAGAGATACCAACTCATCGCAGGCATCGGACCATAACCTTTGGATGTGCAGATGACTTCAACTTTGAGAATGAAAAGGTAGAGGAG CTTGATGAGCTTTTTCCTCAGGACCCGACCCCGGACTCTTTAAGCCCAGCAATATCAAGCATCTTTGTTCAAGACCAGCAGTCCTCTGATCTTGGCGAAC TGCCACCTCTAAATGGTGGGCTTCAGAGCAGTCAAGCTGCCGACTATAGTGTGCATTTGGAGCCAACTGCTGGAGATCATTTGAGTTATGAAGAGTCAAA GCCATCCTCTTCCGGTAAAACTGCGGTTGAACATATTGAAAACGAGAAACAGCCTGAAAGAGTGGATACTTTACACAGCGAGGTGGCAGATGATGTTGAG AATCGTTCCAATGGGCTGGTAGGGGAAGATCCTGATGTCGATGTCTGGAAGGAAAATGTGGATGAAGATGGATCAACCCACCGGAGGCATCGAACCATAA CGTTCGGGTGTGCCAAAGATTTTGACTTTGAAGACGCACAGCAGGATGATAATGACGAGTCTTCGAATGGAAGCATGGTCGAGAAGCAAGGGGAGACTGA CTGGTCATTCTTTCCAATTATCCAGGCTGCTGCTTGA
AA sequence Show only first row Show all	>Lus10017503 pacid=23163154 polypeptide=Lus10017503 locus=Lus10017503.g ID=Lus10017503.BGIv1.0 annot-version=v1.0 MRRSNHSNGGREAVASRALVLVNSNNSDNALVTVNAAANRIAFVDNRLSQPSPAAAQRRRKRIGHAVFVSESQPPGSGNEASPAETGNQPAAAMLQFIAP PSSPASFLPSEPPSCTQSPAGLVSLSPSMYSPSGPASIFSIGPYAHETQLVSPPALSTITTDPSTAPFTPPPESFRLNTTASSPEVPFARLLDPRFQNGE VGHRFSSSHNDFPHYQFHPGSPAGQVISPRSVISGSGTSSPFPDGEFAAVGFPFMEFRVGTDPRTQGSGTLTPDSNFVLDQQSSDLGALPNLDGWRQNNQ AANCRFFFEFTAGDRLTQLEKEVVKLPSEPAHVSGNPEEDPVAVKTDGEQEVPTHCRHRTITLGCVNDFDFENAEGEELSKLAPEDRESHQGSATSTTDS VRLASSNFDVDRKSSDLGKLLFLDGGHQNNQVGNHRLFFELTSGNHLTQPERETLSGTSEKASDVGGEDEEQEIPTHRRHRTITFGCADDFNFENEKVEE LDELFPQDPTPDSLSPAISSIFVQDQQSSDLGELPPLNGGLQSSQAADYSVHLEPTAGDHLSYEESKPSSSGKTAVEHIENEKQPERVDTLHSEVADDVE NRSNGLVGEDPDVDVWKENVDEDGSTHRRHRTITFGCAKDFDFEDAQQDDNDESSNGSMVEKQGETDWSFFPIIQAAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52430			hydroxyproline-rich glycoprote...		Lus10017503 [exp]	0	1
AT1G66340		AtETR1, EIN1, E...	ETHYLENE RESPONSE 1, ETHYLENE ...		Lus10007357 [exp]	4.1	0.8052
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10037412 [exp]	15.6	0.7920
AT4G15960			alpha/beta-Hydrolases superfam...		Lus10038649 [exp]	15.9	0.7749
AT5G02050			Mitochondrial glycoprotein fam...		Lus10024352 [exp]	18.2	0.7347
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10013483 [exp]	21.6	0.7687
AT1G66340		AtETR1, EIN1, E...	ETHYLENE RESPONSE 1, ETHYLENE ...		Lus10020778 [exp]	22.4	0.7398
AT5G50240		PIMT2, AtPIMT2	Arabidopsis thaliana protein-l...		Lus10017776 [exp]	28.2	0.7597
					Lus10013093 [exp]	28.9	0.7395
AT5G35732			unknown protein		Lus10006404 [exp]	36.4	0.7608
AT2G01620		MEE11	maternal effect embryo arrest ...		Lus10007930 [exp]	36.9	0.7624

Compare expression of checked genes

Lus10017503 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.