Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45140 1652 / 0 NRPC2 nuclear RNA polymerase C2 (.1) AT4G21710 590 / 0 NRPB2, EMB1989 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) AT3G23780 431 / 3e-132 NRPE2, DMS2, DRD2, NRPD2a DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) AT3G18090 409 / 5e-125 NRPD2B nuclear RNA polymerase D2B (.1) AT1G29940 322 / 1e-92 NRPA2 nuclear RNA polymerase A2 (.1) ATCG00190 155 / 2e-38 ATCG00190.1, RPOB RNA polymerase subunit beta (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028778 [exp] 2170 / 0 AT5G45140 1711 / 0.0 nuclear RNA polymerase C2 (.1) Lus10015446 [exp] 575 / 0 AT4G21710 2298 / 0.0 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) Lus10011182 [exp] 570 / 0 AT4G21710 2293 / 0.0 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) Lus10011322 [exp] 510 / 1e-169 AT5G45140 468 / 2e-153 nuclear RNA polymerase C2 (.1) Lus10026157 [exp] 368 / 1e-108 AT1G29940 1574 / 0.0 nuclear RNA polymerase A2 (.1) Lus10027166 [exp] 337 / 2e-98 AT3G23780 1435 / 0.0 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) Lus10039677 [exp] 264 / 7e-73 AT3G23780 696 / 0.0 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) Lus10012207 [exp] 160 / 6e-46 AT5G45140 150 / 6e-44 nuclear RNA polymerase C2 (.1) Lus10039408 [exp] 133 / 2e-34 AT5G45140 129 / 9e-34 nuclear RNA polymerase C2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G003000 [exp] 1782 / 0 AT5G45140 1826 / 0.0 nuclear RNA polymerase C2 (.1) Potri.004G043200 [exp] 585 / 0 AT4G21710 2271 / 0.0 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) Potri.018G019100 [exp] 450 / 5e-139 AT3G23780 1694 / 0.0 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) Potri.001G030750 [exp] 345 / 7e-101 AT1G29940 1674 / 0.0 nuclear RNA polymerase A2 (.1) Potri.013G142232 [exp] 159 / 2e-39 ATCG00190 2015 / 0.0 RNA polymerase subunit beta (.1) Potri.006G263900 [exp] 106 / 3e-25 AT3G23780 253 / 5e-77 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04567 [flax] [poplar] RNA_pol_Rpb2_5 RNA polymerase Rpb2, domain 5 PF04566 [flax] [poplar] RNA_pol_Rpb2_4 RNA polymerase Rpb2, domain 4 PF04561 [flax] [poplar] RNA_pol_Rpb2_2 RNA polymerase Rpb2, domain 2 PF04565 [flax] [poplar] RNA_pol_Rpb2_3 RNA polymerase Rpb2, domain 3 PF04563 [flax] [poplar] RNA_pol_Rpb2_1 RNA polymerase beta subunit PF04560 [flax] [poplar] RNA_pol_Rpb2_7 RNA polymerase Rpb2, domain 7
Representative CDS sequence Show only first row Show all	>Lus10017504 pacid=23163148 polypeptide=Lus10017504 locus=Lus10017504.g ID=Lus10017504.BGIv1.0 annot-version=v1.0 ATGGGCGCCGTTGAAGCTGAGAGGCCATCTGACGGAGAGCCAAACACTGTTGAGCAGTTGATTGACAAGCAAAAGCTTGCCGCTCCGATAAAAAATCCAG TGGACAAGTTTCAGCTCGTCCCGGAGTTCTTGAAGGTTAGAGGATTGGTGAAGCAGCATCTGGATTCTTTTAATTACTTCGTAAATGTTGGTATAAAGAA AATAGTGCGAGCCAATGATCGAATTGTTTCGACCATTGATCCTGGAATCTACATCAGGTTTAAAGATGTGAGGATCGGTAAGCCTACTGAGATAGACGAG GAAAGTGGTATTCACGCACTTACTCCACACTCATGCCGTCTATCCGATAGGACTTATTCTGCACCATTATTGGTGGATATAGAGTATATTTATGGAAGTA ATGATCAAAAGCAGAGAAAAGATAAGCGTGATATGGTTATCGCGAAAATGCCAATCATGTTACGGAGTTCCTGTTGTGTTTTGTATCAAAAGGACGAAGC TGAACTTGCAAAACTTGGTCTGTCTGCGGTTATACTGTTATGTGAATGTCCACTTGATCCTGGAGGTTATTTTGTTGTTAAGGGAACAGAGAAGGTGATC TTAATACAAGAGCAGCTTTCAAAGAACAGAATCATCATCGAGTCAGACAGGAAGGGGAACCTAATAGCATCTGTTACAAGTAGCACAGAAGCAACTAAGA GCAAAACAATTATCATGATGGAAAAATATAGTGCTCTCCTTCTGCCTTCTCTTGAGGAATGTGCAAGTCAGAGGGTCTACACACAAGAGAAAGCCTTGAA ATTCCTCGACTTTAAGAAAGATGGGAGAGCACTGTCTATACTTAGAGACACATTTCTTGCTAATGTTCCGGTTCATAACAATAATTTTCGCCCAAAATGC ATTTATGTTGCTGTAATGCTCAGAAGGATGATGGAGGCTCTATTAAACAAGGATGCAATGGATGACAAGGATTATGTTGGCAATAAGAGATTAGAGCTGT CTGGCCAGTTAATTTCTTTACTGTTTGAGGACTTGTTTAAGACGATGATCACAGAGACTGTAAAAAACATCGATGGCACGCTCAAGAAACAAAATCGATC TAGCCGTTTCGATCCTTCTATGTTTTTACTCAGAACCAATTCTGAACGTGGGATTATTACAAATGGGCTGGAAAGAGCCCTCTCCACTGGTAATTGGGAT GTCAAGCGCTTTAAAATGAACAGGAAAGGAGTTACACAGGTACTTGCTAGGTTATCTTTCATAGGTTCTTTGGGTTACTCGACAAGAATCTCACCACAAT TTGAGAAGTCGAGGAAAGTGAGTGGACCTAGAGCATTGCAACCTAGTCAGTGGGGCATGCTTTGTCCTTGTGATACTCCAGAAGGTGAAGCTTGTGGGCT GGTGAAGAACTTGGCCCTCATGACTCATGTTACCACTGATGACGAGGATGGCCCGTTAATTTCCCTTTGCTATTGTTTAGGTGTTGAGGACCTGGAGCTT CTTACTGGGGAAGAACTCCACACTCCAAATTCTTACTTGGTTATATTCAATGGACTGATTCTTGGCAAACACAGGAGACCTCGGCATTTTGCTCACGCAA TGAGAAAGTTACGAAGAGCTTGCAAAATTGGCGAGTTCGTAAGCATTTTTGTGAATGAAAAACAGCGCACTGTTTATATTGCTTCTGATGGTGGGCGGGT ATGTCGTCCGCTGGTTATTGCGGACGAAGGCAAATCAAGAGTCAAAGAGCACCATATGAAGGAGCTTTCGGATGGCGTACGGACATTTGATGACTTTTTA CGAGAAGGGTTGATCGAGTATCTTGATGTCAATGAGGAGAATAATGCTTTGATTGCTTTATATGAAGGGGAAGCTACACCTGAGACAACTCACATCGAGA TAGAACCTTTCACCATACTAGGTGTTATTGCTGGGCTGATTCCATACCCTCATCATAATCAGTCACCAAGAAATACATATCAGTTATGTCGAATGGACAC ACTACTCTACTTGCTCGTGTATCCTCAACGTCCTTTGTTAACGACAAGGACTATTGAACTGGTGGGATACGATAAACTTGGAGCTGGCCAGAATGCAACT GTTGCTGTAATGAGCTATAGTGGCTATGACATAGAAGATGCAATTGTCATGAACAAGTCGTCTCTGGATCGTGGTTTTGGTCGCTGTATAGTCATGAAGA AGTATGCTGCTTTTCCATGGCAGTCCTGCATCATGATTCGCCAGTATGCTAATAAGACTTCAGAAAGGATAGTAAAGCCACGGAGACTAGATAACAAGGA CAAGGAGAGGGTCTTAGATGAAGACGGAATCGCTGCTCCTGGCCAAATAATTCGAACAGATGATATTTATGTCAACAAGGAGACTCCAGTTGAAACCAGG ACTGGATCTGCAGTTGATATGAAATATCGACCTAGCATGCAAAGATACAAAGGGCCTGCAGGGGAGTCATGTGTGGTTGATCGTGTTGCTCTGTCTACTG GCAAGGATGGCAATTTGTCTATAAAATTAATTATTCGTCAAACTCGTAGACCAGAGTTGGGTGACAAATTTAGTAGCAGACATGGTCAAAAGGGTGTCTG TGGAACTATCATTCAACAAGAAGATTTTCCCTTCTCTGAACGTGGGATCTGCCCTGATTTAATTATGAACCCACATGGATTTCCGAGTCGGATGACAGTT GGGAAGATGATAGAGCTTCTTGGAGGTAAAGCTGGAGTTTCTTGTGGTAGATTCCATTATGGCAGTGCATTTGGAGAACCAAGTGGTCATGCAGACAAAG TTGATGCCATAAGTGAAACTCTCGTCAGGCATGGCTTTAGCTATAATGGCAAGGATATGATCTATTCAGGAATAACTGGTAGTCCACTTCAAGCGTATAT ATTCATGGGACCCATATACTACCAAAAGTTGAAACATATGGTCTTAGATAAAATGCATGCCAGGGGTTCAGGACCCCGGGTTATGCTTACTAGACAGCCC ACTGAAGGAAGAGCTCGAAACGGAGGACTGCGAGTTGGAGAAATGGAACGTGACTGTCTGATTGCATATGGGGCTAGTATGCTGATTTTTGAGCGCCTGA TGGTTTCAAGTGATCCATTTGAAGTTCAGGTTTGCCAAGTCTGTGGTTTGTTAGGATATTACAGCCACAAGCTGAGAAGTGGGTTTTGTACGACTTGCAA GAACGGAGAAAATGTTTCAACAATGAAACTACCCTATGCTTGCAAGCTTTTGATTCAGGAACTTCAATCAATGAACATTGTACCGCGGCTTAAACTCCAG GAGGCATGA
AA sequence Show only first row Show all	>Lus10017504 pacid=23163148 polypeptide=Lus10017504 locus=Lus10017504.g ID=Lus10017504.BGIv1.0 annot-version=v1.0 MGAVEAERPSDGEPNTVEQLIDKQKLAAPIKNPVDKFQLVPEFLKVRGLVKQHLDSFNYFVNVGIKKIVRANDRIVSTIDPGIYIRFKDVRIGKPTEIDE ESGIHALTPHSCRLSDRTYSAPLLVDIEYIYGSNDQKQRKDKRDMVIAKMPIMLRSSCCVLYQKDEAELAKLGLSAVILLCECPLDPGGYFVVKGTEKVI LIQEQLSKNRIIIESDRKGNLIASVTSSTEATKSKTIIMMEKYSALLLPSLEECASQRVYTQEKALKFLDFKKDGRALSILRDTFLANVPVHNNNFRPKC IYVAVMLRRMMEALLNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTMITETVKNIDGTLKKQNRSSRFDPSMFLLRTNSERGIITNGLERALSTGNWD VKRFKMNRKGVTQVLARLSFIGSLGYSTRISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDDEDGPLISLCYCLGVEDLEL LTGEELHTPNSYLVIFNGLILGKHRRPRHFAHAMRKLRRACKIGEFVSIFVNEKQRTVYIASDGGRVCRPLVIADEGKSRVKEHHMKELSDGVRTFDDFL REGLIEYLDVNEENNALIALYEGEATPETTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQLCRMDTLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNAT VAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKYAAFPWQSCIMIRQYANKTSERIVKPRRLDNKDKERVLDEDGIAAPGQIIRTDDIYVNKETPVETR TGSAVDMKYRPSMQRYKGPAGESCVVDRVALSTGKDGNLSIKLIIRQTRRPELGDKFSSRHGQKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTV GKMIELLGGKAGVSCGRFHYGSAFGEPSGHADKVDAISETLVRHGFSYNGKDMIYSGITGSPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQP TEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCQVCGLLGYYSHKLRSGFCTTCKNGENVSTMKLPYACKLLIQELQSMNIVPRLKLQ EA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Lus10017504 [exp]	0	1
AT5G60040		NRPC1	nuclear RNA polymerase C1 (.1....		Lus10013536 [exp]	1.4	0.8185
AT1G76630			Tetratricopeptide repeat (TPR)...		Lus10025170 [exp]	2.0	0.8271
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Lus10019891 [exp]	4.5	0.7500
AT1G04010		ATPSAT1	phospholipid sterol acyl trans...		Lus10008234 [exp]	7.1	0.7635
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10036700 [exp]	8.5	0.7867
AT3G06920			Tetratricopeptide repeat (TPR)...		Lus10043417 [exp]	9.2	0.7521
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Lus10019735 [exp]	12.0	0.7660
AT1G12930			ARM repeat superfamily protein...		Lus10012590 [exp]	12.0	0.7631
AT1G06710			Tetratricopeptide repeat (TPR)...		Lus10026747 [exp]	15.7	0.7239
AT2G01730		ATCPSF73-II, ED...	embryo sac development arrest ...		Lus10035763 [exp]	16.1	0.6926

Compare expression of checked genes

Lus10017504 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.