Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75060 178 / 6e-56 unknown protein AT1G19330 176 / 8e-55 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028777 [exp] 462 / 5e-168 AT1G75060 179 / 2e-56 unknown protein Lus10032725 [exp] 163 / 6e-50 AT1G75060 286 / 1e-98 unknown protein Lus10018805 [exp] 160 / 3e-48 AT1G75060 288 / 5e-98 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G101600 [exp] 298 / 2e-103 AT1G75060 178 / 7e-56 unknown protein Potri.003G130100 [exp] 295 / 3e-102 AT1G75060 178 / 8e-56 unknown protein Potri.002G133500 [exp] 188 / 5e-60 AT1G75060 312 / 2e-108 unknown protein Potri.014G041200 [exp] 187 / 2e-59 AT1G75060 317 / 3e-110 unknown protein Potri.005G088101 [exp] 97 / 3e-26 AT1G19330 55 / 9e-11 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017506 pacid=23163198 polypeptide=Lus10017506 locus=Lus10017506.g ID=Lus10017506.BGIv1.0 annot-version=v1.0 ATGCTGGGGAGTGAGGTTTGTTCTAGGAGGATAGTTTCACCATTGTTCAGAGAGAGGGAGGAGAGTGGTGATGATGAGCTATCAGTTCTGCCAAGGCACA CAAAGGTCATTGTCACTGGTAACAACAGAACAAAGTCTGTTCTTGTGGGCTTGCAAGGCGTCGTCAAGAAGGCTGTTGGCCTTGGAGGTTGGCATTGGCT GGTTTTGAAAAATGGGGTTGAAGTGAAGCTGCAGAGGAATGCACTCAGCGTCCTTGAACATCCGACGGGGAACGAAGTGGATGACGAATATGATTTTGAT ATCAGCAGTGGCTCTGACATTGGTGAAAAGGACCATGATTTCTCTAGCGGAGGTGAGTTCACCAAATTCAGCAGGCCAAGAGCTCGGTCAGCAAGGCCGT GCTATCCAGCAAAGTCCGCAACTCGTATCGGTTATAGAGATGTTCAGTCAATTATCCACACTTCTCGGGCAAAGGTGAGCCTGGTAAAACTGGGGAAGGA GTCCTTGTGGAGATATTGCAGACATTACAAGCTACCTGGGATCAACTGTTATTCAACAAGGGAACAGATGCTTGCTAGCGTGCAACACCATTTCAGTTCA ATGCAGCGAGTGGACGAAGCTCAAGTGGTGATGGATTTCATCGTTCATGCAGCAAAGAGGCGGAAACAGTTCAGTAAACCAGCCAAGTGA
AA sequence Show only first row Show all	>Lus10017506 pacid=23163198 polypeptide=Lus10017506 locus=Lus10017506.g ID=Lus10017506.BGIv1.0 annot-version=v1.0 MLGSEVCSRRIVSPLFREREESGDDELSVLPRHTKVIVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLKNGVEVKLQRNALSVLEHPTGNEVDDEYDFD ISSGSDIGEKDHDFSSGGEFTKFSRPRARSARPCYPAKSATRIGYRDVQSIIHTSRAKVSLVKLGKESLWRYCRHYKLPGINCYSTREQMLASVQHHFSS MQRVDEAQVVMDFIVHAAKRRKQFSKPAK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75060			unknown protein		Lus10017506 [exp]	0	1
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10014327 [exp]	2.0	0.8740
AT2G25560			DNAJ heat shock N-terminal dom...		Lus10032540 [exp]	3.0	0.8695
AT4G30610		SCPL24, BRS1	SERINE CARBOXYPEPTIDASE 24 PRE...		Lus10015489 [exp]	3.5	0.8568
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Lus10009265 [exp]	4.4	0.8841
AT3G13510			Protein of Unknown Function (D...		Lus10010315 [exp]	10.4	0.8169
					Lus10035688 [exp]	13.0	0.8485
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Lus10019394 [exp]	13.0	0.8319
AT5G56590			O-Glycosyl hydrolases family 1...		Lus10012937 [exp]	13.5	0.8479
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Lus10025355 [exp]	13.7	0.8318
AT2G46810	bHLH	bHLH070	basic helix-loop-helix (bHLH) ...		Lus10010101 [exp]	13.8	0.8542

Compare expression of checked genes

Lus10017506 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.