Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35785 122 / 1e-34 RNA-binding (RRM/RBD/RNP motifs) family protein AT1G07350 112 / 6e-32 SR45a serine/arginine rich-like protein 45a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G46020 58 / 3e-11 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G52380 61 / 6e-11 CP33, PDE322 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) AT5G64200 60 / 1e-10 ATSC35, At-SC35 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) AT1G73530 57 / 4e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G52150 57 / 1e-09 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G19030 55 / 2e-09 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT4G24770 56 / 3e-09 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT3G53460 56 / 3e-09 CP29 chloroplast RNA-binding protein 29 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028776 [exp] 283 / 1e-97 AT4G35785 127 / 5e-36 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10041854 [exp] 121 / 8e-34 AT4G35785 179 / 6e-56 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10028400 [exp] 119 / 2e-33 AT4G35785 181 / 2e-57 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10040705 [exp] 120 / 1e-32 AT1G07350 163 / 2e-46 serine/arginine rich-like protein 45a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10018202 [exp] 119 / 2e-31 AT1G07350 145 / 1e-41 serine/arginine rich-like protein 45a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10040854 [exp] 71 / 6e-16 AT3G46020 112 / 1e-33 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10005891 [exp] 67 / 3e-13 AT3G45980 230 / 1e-76 HISTONE H2B, Histone superfamily protein (.1) Lus10023191 [exp] 61 / 7e-11 AT3G53460 263 / 2e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10002222 [exp] 60 / 9e-11 AT3G53460 263 / 1e-87 chloroplast RNA-binding protein 29 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G130301 [exp] 143 / 5e-43 AT4G35785 145 / 3e-43 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.005G105700 [exp] 119 / 3e-33 AT4G35785 158 / 4e-48 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.009G041700 [exp] 118 / 1e-31 AT4G35785 139 / 6e-39 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.001G248100 [exp] 116 / 3e-31 AT1G07350 125 / 2e-35 serine/arginine rich-like protein 45a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G101500 [exp] 112 / 3e-31 AT4G35785 97 / 1e-25 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.011G130300 [exp] 61 / 6e-12 AT5G54580 161 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G038200 [exp] 61 / 1e-11 AT1G73530 141 / 6e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G409800 [exp] 60 / 2e-11 AT5G54580 174 / 2e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G340800 [exp] 61 / 6e-11 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.015G086500 [exp] 59 / 3e-10 AT4G24770 290 / 6e-97 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10017507 pacid=23163168 polypeptide=Lus10017507 locus=Lus10017507.g ID=Lus10017507.BGIv1.0 annot-version=v1.0 ATGTCGCCTTTAAGGGAAGGAAGGCATGGAGCCTCCAAGTCTCCTCCTCCACGGGCCTCGGCGTCTCCTCCAAGAGGAAGAAGGTCCAGATCGCCACGAC GAAGCCGCTCCAGATCAAGGAGCCGAGATTCTGTTGATGCATCCAATCCTGGAAATAACCTCTATGTCACTGGTTTATCCACTAGGGTTACCTCCAGCGA CCTGGAGAAGTTCTTTGGCAAGGAAGGAAAGGTTGTGAACTGCAATCTTGTTTGCGATCCACGCTCCAAGGAATCCCGTGGATTTGCTTTTGTTACTATG GAATCCAAAGATGATGCTGACCGCTGTATCAAGTACTTGAATCGTTCTGTCCTTGAAGGACGACTAGTCACTGTAGAAAAGGGCGTGGTCATAGGCGCTC TAGAAGCTACTCACCTCGCAGACGTGAACGAAGAGATAGAGATCCTTACTCGAGGGATCTGCCTCCTCGGCGAGGCAGATCCAGGTCTCCATCCGGTAAA AGGAGAGATGATCATCAGGACACACACAGAAGGCACAATGAACCCTCTTTGTCGGCTGATCGCAGCAGCTACCGCAGGTAGGAATCGGGACATGGAGAAA GAAGAAACTATGTGA
AA sequence Show only first row Show all	>Lus10017507 pacid=23163168 polypeptide=Lus10017507 locus=Lus10017507.g ID=Lus10017507.BGIv1.0 annot-version=v1.0 MSPLREGRHGASKSPPPRASASPPRGRRSRSPRRSRSRSRSRDSVDASNPGNNLYVTGLSTRVTSSDLEKFFGKEGKVVNCNLVCDPRSKESRGFAFVTM ESKDDADRCIKYLNRSVLEGRLVTVEKGVVIGALEATHLADVNEEIEILTRGICLLGEADPGLHPVKGEMIIRTHTEGTMNPLCRLIAAATAGRNRDMEK EETM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Lus10017507 [exp]	0	1
AT3G53900		UPP, PYRR	PYRIMIDINE R, uracil phosphori...		Lus10024350 [exp]	1.7	0.8847
AT5G39760	ZF_HD	ATHB23, ZHD10	ZINC FINGER HOMEODOMAIN 10, ho...		Lus10005244 [exp]	3.5	0.8563
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Lus10039715 [exp]	5.0	0.8218
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10014717 [exp]	5.2	0.8545
AT1G53520			Chalcone-flavanone isomerase f...		Lus10026174 [exp]	8.5	0.8481
AT5G27990			Pre-rRNA-processing protein TS...		Lus10006795 [exp]	10.9	0.8194
AT2G14520			CBS domain-containing protein ...		Lus10030665 [exp]	13.0	0.8205
AT1G08750			Peptidase C13 family (.1.2.3)		Lus10005520 [exp]	14.4	0.7976
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Lus10036802 [exp]	15.2	0.8162
AT2G33610		CHB2, ATSWI3B	CHROMATIN REMODELING COMPLEX S...		Lus10025165 [exp]	15.5	0.8115

Compare expression of checked genes

Lus10017507 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.