Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23460 1499 / 0 Adaptin family protein (.1) AT4G11380 1499 / 0 Adaptin family protein (.1.2) AT5G11490 327 / 3e-98 adaptin family protein (.1.2) AT3G55480 128 / 5e-30 AP-3beta, PAT2 beta-subunit of adaptor protein complex 3, protein affected trafficking 2 (.1.2) AT4G31490 58 / 3e-08 Coatomer, beta subunit (.1) AT4G31480 57 / 5e-08 Coatomer, beta subunit (.1.2) AT1G60070 55 / 2e-07 Adaptor protein complex AP-1, gamma subunit (.1.2) AT5G22780 52 / 3e-06 Adaptor protein complex AP-2, alpha subunit (.1) AT5G22770 52 / 3e-06 ALPHA-ADR alpha-adaptin (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028775 [exp] 1705 / 0 AT4G23460 1556 / 0.0 Adaptin family protein (.1) Lus10024654 [exp] 1617 / 0 AT4G23460 1560 / 0.0 Adaptin family protein (.1) Lus10032286 [exp] 1613 / 0 AT4G23460 1567 / 0.0 Adaptin family protein (.1) Lus10022125 [exp] 342 / 6e-100 AT5G11490 1337 / 0.0 adaptin family protein (.1.2) Lus10011675 [exp] 219 / 3e-59 AT5G11490 897 / 0.0 adaptin family protein (.1.2) Lus10023408 [exp] 129 / 5e-30 AT3G55480 1320 / 0.0 beta-subunit of adaptor protein complex 3, protein affected trafficking 2 (.1.2) Lus10040289 [exp] 127 / 1e-29 AT3G55480 1331 / 0.0 beta-subunit of adaptor protein complex 3, protein affected trafficking 2 (.1.2) Lus10015105 [exp] 70 / 9e-12 AT4G31480 1650 / 0.0 Coatomer, beta subunit (.1.2) Lus10031570 [exp] 69 / 1e-11 AT4G31480 1659 / 0.0 Coatomer, beta subunit (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G130400 [exp] 1578 / 0 AT4G23460 1471 / 0.0 Adaptin family protein (.1) Potri.001G101400 [exp] 1566 / 0 AT4G23460 1486 / 0.0 Adaptin family protein (.1) Potri.006G243100 [exp] 331 / 8e-100 AT5G11490 1355 / 0.0 adaptin family protein (.1.2) Potri.010G202800 [exp] 124 / 7e-29 AT3G55480 1246 / 0.0 beta-subunit of adaptor protein complex 3, protein affected trafficking 2 (.1.2) Potri.018G007400 [exp] 75 / 2e-13 AT4G31480 1672 / 0.0 Coatomer, beta subunit (.1.2) Potri.006G273300 [exp] 74 / 5e-13 AT4G31480 1657 / 0.0 Coatomer, beta subunit (.1.2) Potri.009G150300 [exp] 54 / 4e-07 AT5G22780 1640 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Potri.004G189700 [exp] 53 / 1e-06 AT5G22770 1659 / 0.0 alpha-adaptin (.1.2.3) Potri.016G104700 [exp] 49 / 2e-05 AT1G60070 1329 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Potri.006G092800 [exp] 47 / 6e-05 AT1G60070 1356 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0545 [flax] [poplar] APCOP-app_sub PF09066 [flax] [poplar] B2-adapt-app_C Beta2-adaptin appendage, C-terminal sub-domain CL0020 [flax] [poplar] TPR PF01602 [flax] [poplar] Adaptin_N Adaptin N terminal region CL0159 [flax] [poplar] E-set PF02883 [flax] [poplar] Alpha_adaptinC2 Adaptin C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10017508 pacid=23163151 polypeptide=Lus10017508 locus=Lus10017508.g ID=Lus10017508.BGIv1.0 annot-version=v1.0 ATGAGCGGCCACGATTCCAAGTACTTCTCCACGACCAAGAAGGGAGAAATCCCTGAACTTAAAGAAGAGCTCAATTCTCAGTACAAGGATAAGAGAAAGG ATGCAGTTAAAAAAGTGATTGCTGCAATGACTGTCGGGAAGGATGTCTCATCACTATTCACAGATGTGGTGAACTGCATGCAAACTGAAAATCTGGAGCT CAAGAAGCTCGTTTATCTGTACCTCATTAACTATGCTAAAAGTCAGCCTGATCTTGCAATACTTGCTGTTAATACTTTCGTCAAGGATTCACAAGATCCA AATCCCTTAATTCGAGCTTTGGCTGTTCGGACAATGGGCTGCATTCGTGTTGACAAAATCACTGAGTACTTGTGTGATCCTCTTCAGCGGTGCCTCAAGG ATGATGATCCTTATGTTCGCAAGACGGCAGCAATTTGTGTCGCAAAACTGTTCGACATAAATGCTGAATTAGTTGAAGATAGGGGTTTTCTTGATTCTCT CAAGGATTTGATTTCAGACAATAACCCGATGGTGGTTGCTAATGCTGTTGCAGCTCTAGCCGAAATTCAAGAGAATAGTGCTAGACCCATTTTTGAGATT ACCAGTCAAACTCTTTCAAAGTTGCTTACTGCTCTAAATGAGTGCACAGAGTGGGGTCAAGTCTTTATTTTGGATGCACTTTCAAGATACAAGGCAGCAG ATGCTCGTGAAGCTGAAAATATAGTGGAACGAGTCACTCCAAGGCTACAGCACGCTAATTGTGCAGTTGTACTTTCAGCTGTTAAGATGATCCTTCAACA AATGGAACTCATTACGAGCACTGATGTAGTGCGGAATCTTTGCAAGAAGATGGCTCCTCCTCTTGTGACACTTCTATCTGCAGAACCTGAAATTCAATAT GTTGCGTTACGAAACATAAACCTAATTGTTCAAAGGAGACCGACAATCCTTGCTCATGAAATTAAGGTGTTTTTCTGCAAGTACAATGATCCAATTTATG TCAAGATGGAGAAGCTTGAAATTATGATAAAACTCGCTTCTGACCGCAACATAGACCAGGTTCTATTGGAGTTTAAAGAGTATGCAACAGAAGTTGATGT GGATTTCGTAAGAAAGGCTGTACGGGCCATTGGTCGCTGTGCTATAAAGTTAGAGAGGGCGGCTGAAAGATGCATTAGTGTTCTGCTTGAACTTATCAAG ATTAAAGTAAATTATGTGGTTCAAGAGGCTATTATTGTTATCAAAGACATATTTAGAAGATACCCAAATACATATGAATCTATCATTGCAACTCTATGTG AGAGCTTAGATACTTTGGATGAACCAGAAGCCAAGGCATCCATGATCTGGATCATTGGTGAATATGCTGAAAGAATTGACAATGCTGATGAACTCCTTGA AAGCTTCTTGGAGAGTTTCCCTGAAGAACCTGCACAAGTGCAGTTGCAGTTATTGACTGCAACTGTCAAACTCTTCCTCAAGAAGCCAACTGAAGGTCCT CAGCAAATGATTCAGGTTGTTTTGAACAATGCCACCGTAGAGACAGATAATCCTGACCTAAGGGACCGTGCATATATATATTGGCGATTATTATCAACTG ATCCGGAGGCAGCTAAAGATGTTGTGTTAGCGGAAAAGCCAGTGATCAGTGATGATTCAAACCAACTCGATCCTTCTTTACTCGATGAGCTTCTTGCAAA CATCGCCACATTGTCCTCTGTGTATCACAAACCGCCAGAAGCATTCGTAACTCGTGTGAGAACACTGGCACAGAAGACTGATGATGACGACTATCCTGAT GGAGCTGAAGCCACTGAATCATCTTCCCATCCTGTCCATGGTGCGGCATCACCTGCAAGAAATGTTCCTCATGCTGGAACAAAGCAAATGATTCCTGTAC CAGCTGCTACCCCTCCACAGGCTGCCCCTGTCCCTGATTTGATGGGCGACCTTATGGGTTTGGATAACAGTTCCATTGTCCCTGTTGATCAGCCTTCTAC TACTTCTGGCCCTCCCTTGCCTGTCGTATTACCAGCAGCAACTGCTCAAGGTTTACAAATAAGTGCACAGCTAACACGACGAGATGGACAAATCTTCTAC AGCATGTTGTTTGAGAACAACACACAGATGCCACTCGATGGGTTCCTAATCCAGTTCAACAAGAATACACTTGGTCTTGCTGCCGGTGGACCGTTGCAGG TTCCACAATTGCAACCCGGGACATCAACAACCACTCTCCTGCCCATGGTTGTGTTTCAAAATGTGTCTCCTGGTCCTCCAAGCTCGCTTTTACAAGTAGC TGTTAAGAATAACCAACAGCAAGTATGGTACTTCAACGACAAAATCGCATTTCACGTTTTCTTCAGCGAGGATGGGAGGATGGAACGTGGATCCTTCCTC GAGACATGGAGGTCCCTGCCTGATGCAAACGAAATCTCGAAGGACTTCCCGAGCATTGTGTTGAGCAGTGCAGACGCAATGGTGGAACGGGTAGCTGCAT CGAACATGTTCTTCATCGCCAAGAGAAAGCACGCGAACCAAGACGTTTTCTACTTCTCGACGAAAATACCAGGGGGAGTTCCTTTCTTAGTCGAGCTAAC GTCAGTGATAGGAAGCCCTGGAGTGAAGTGTGCGATCAAGACTCCCAACCCTGAAATGTCACCACTTTTCTTCGAGGCGGTTGAAGCTCTCCTCAATGCT TGA
AA sequence Show only first row Show all	>Lus10017508 pacid=23163151 polypeptide=Lus10017508 locus=Lus10017508.g ID=Lus10017508.BGIv1.0 annot-version=v1.0 MSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDP NPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLFDINAELVEDRGFLDSLKDLISDNNPMVVANAVAALAEIQENSARPIFEI TSQTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQY VALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIK IKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGP QQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVRTLAQKTDDDDYPD GAEATESSSHPVHGAASPARNVPHAGTKQMIPVPAATPPQAAPVPDLMGDLMGLDNSSIVPVDQPSTTSGPPLPVVLPAATAQGLQISAQLTRRDGQIFY SMLFENNTQMPLDGFLIQFNKNTLGLAAGGPLQVPQLQPGTSTTTLLPMVVFQNVSPGPPSSLLQVAVKNNQQQVWYFNDKIAFHVFFSEDGRMERGSFL ETWRSLPDANEISKDFPSIVLSSADAMVERVAASNMFFIAKRKHANQDVFYFSTKIPGGVPFLVELTSVIGSPGVKCAIKTPNPEMSPLFFEAVEALLNA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23460			Adaptin family protein (.1)		Lus10017508 [exp]	0	1
AT5G42940			RING/U-box superfamily protein...		Lus10024810 [exp]	2.4	0.8031
AT1G08680		ZIGA4, AGD14	ARF-GAP domain 14, ARF GAP-lik...		Lus10005686 [exp]	2.6	0.7756
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10017098 [exp]	8.6	0.7986
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10025239 [exp]	10.2	0.7846
AT4G00060		MEE44	maternal effect embryo arrest ...		Lus10009279 [exp]	11.5	0.7769
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10037820 [exp]	11.7	0.7985
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10039795 [exp]	11.7	0.7892
AT1G17500			ATPase E1-E2 type family prote...		Lus10037622 [exp]	12.0	0.7407
AT1G76950		PRAF1	Regulator of chromosome conden...		Lus10018904 [exp]	13.0	0.7641
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10018563 [exp]	14.5	0.7380

Compare expression of checked genes

Lus10017508 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.