Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63830 349 / 6e-123 PLAC8 family protein (.1.2.3) AT5G41390 347 / 1e-121 PLAC8 family protein (.1.2) AT4G23470 339 / 6e-119 PLAC8 family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028774 [exp] 374 / 1e-131 AT1G63830 350 / 1e-122 PLAC8 family protein (.1.2.3) Lus10018826 [exp] 295 / 2e-100 AT4G23470 328 / 2e-113 PLAC8 family protein (.1.2.3) Lus10014759 [exp] 303 / 4e-100 AT3G09740 308 / 4e-102 syntaxin of plants 71 (.1) Lus10036377 [exp] 137 / 6e-37 AT3G09740 347 / 8e-117 syntaxin of plants 71 (.1) Lus10000149 [exp] 101 / 7e-27 AT5G41390 103 / 3e-28 PLAC8 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G130700 [exp] 382 / 1e-135 AT1G63830 341 / 1e-119 PLAC8 family protein (.1.2.3) Potri.001G101100 [exp] 375 / 7e-133 AT1G63830 353 / 2e-124 PLAC8 family protein (.1.2.3) Potri.014G087600 [exp] 319 / 4e-111 AT5G41390 327 / 8e-114 PLAC8 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04749 [flax] [poplar] PLAC8 PLAC8 family
Representative CDS sequence Show only first row Show all	>Lus10017509 pacid=23163208 polypeptide=Lus10017509 locus=Lus10017509.g ID=Lus10017509.BGIv1.0 annot-version=v1.0 ATGGCTTCCCAGGCGCATTTGGACAAGATGCAGCTCCGCCAGAATTACCGCAATCTCTGGCACAGCGATCTTGTGGGCACCATCCAGGCTGACACCCCAT ATTGCTGCCTTGCTCTTTGGTGTGGGCCTTGTGTATCATATTTGCTCCGCAAACGGGCACTTTACAATGACATGTCAAGGTATGTTTGCTGTGCTGGTTA TATGCCTTGTAGTGGAAGGTGCGGCGAAAGTAAGTGCCCAGAGTTCTGCCTTTGCACCGAGGTCTTCCTGTGCTTTGGAAATTCCGTAGCGTCCACTAGG TTTATGCTGCAAGATGAATTCAACATTCAGACAACTAAGTGTGACAACTGCATTATTGGTTTCATGCTCTGCCTCCAACAAATTGCGTGCATATTCTCCA TAGTTGCCATGATTGTTGGAAGTGAGGAGATATCGGAGGCATCCCAGTTACTATCTTGCTTGTCTGATATGGTCTATTGCACGGTCTGTGCTTGCATGCA AACACAACACAAGATCGAAATGGACAAACGAGATGGCAAGTTTGGGCCACAACCTATGACAGTGCCAGTGGTGCAACAGATGTCTCGTCTGGACCAGCAA TTCCCTCCTGCTGCTGGTTATCCACCTCAACCAGCATATGGCTACCCGCCTCCTCAGTCACAAGGCGGCTACCCTCCTGCTGGCTACCCTCCGGCAGGGT ACCCTCCGCCGGCTTACCCTCCTTCAAACTATCCTCCTAAGTGA
AA sequence Show only first row Show all	>Lus10017509 pacid=23163208 polypeptide=Lus10017509 locus=Lus10017509.g ID=Lus10017509.BGIv1.0 annot-version=v1.0 MASQAHLDKMQLRQNYRNLWHSDLVGTIQADTPYCCLALWCGPCVSYLLRKRALYNDMSRYVCCAGYMPCSGRCGESKCPEFCLCTEVFLCFGNSVASTR FMLQDEFNIQTTKCDNCIIGFMLCLQQIACIFSIVAMIVGSEEISEASQLLSCLSDMVYCTVCACMQTQHKIEMDKRDGKFGPQPMTVPVVQQMSRLDQQ FPPAAGYPPQPAYGYPPPQSQGGYPPAGYPPAGYPPPAYPPSNYPPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63830			PLAC8 family protein (.1.2.3)		Lus10017509 [exp]	0	1
AT1G11050			Protein kinase superfamily pro...		Lus10018855 [exp]	2.4	0.9615
AT1G11050			Protein kinase superfamily pro...		Lus10028549 [exp]	3.5	0.9453
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10008838 [exp]	4.0	0.9495
AT4G24290			MAC/Perforin domain-containing...		Lus10012717 [exp]	4.2	0.9495
AT3G48990			AMP-dependent synthetase and l...		Lus10027478 [exp]	6.0	0.9156
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Lus10013805 [exp]	6.7	0.9354
AT4G24290			MAC/Perforin domain-containing...		Lus10010894 [exp]	8.1	0.9322
AT3G29170			Eukaryotic protein of unknown ...		Lus10007465 [exp]	14.1	0.9010
AT1G21380			Target of Myb protein 1 (.1)		Lus10029739 [exp]	15.5	0.9176
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10003984 [exp]	15.9	0.8981

Compare expression of checked genes

Lus10017509 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.