Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61460 160 / 1e-50 BRH1 brassinosteroid-responsive RING-H2 (.1) AT1G63840 135 / 2e-40 RING/U-box superfamily protein (.1) AT5G41400 115 / 8e-33 RING/U-box superfamily protein (.1) AT4G11360 96 / 3e-25 RHA1B RING-H2 finger A1B (.1) AT4G11370 94 / 1e-24 RHA1A RING-H2 finger A1A (.1) AT4G00305 85 / 2e-21 RING/U-box superfamily protein (.1) AT3G43430 82 / 7e-20 RING/U-box superfamily protein (.1) AT5G20885 78 / 3e-18 RING/U-box superfamily protein (.1) AT4G10150 70 / 1e-14 RING/U-box superfamily protein (.1) AT1G33480 70 / 1e-14 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028773 [exp] 280 / 1e-97 AT3G61460 169 / 4e-54 brassinosteroid-responsive RING-H2 (.1) Lus10032290 [exp] 224 / 1e-75 AT3G61460 200 / 2e-66 brassinosteroid-responsive RING-H2 (.1) Lus10024657 [exp] 222 / 1e-74 AT3G61460 200 / 4e-66 brassinosteroid-responsive RING-H2 (.1) Lus10036378 [exp] 141 / 2e-42 AT3G61460 210 / 5e-70 brassinosteroid-responsive RING-H2 (.1) Lus10008283 [exp] 72 / 1e-15 AT3G61460 77 / 5e-18 brassinosteroid-responsive RING-H2 (.1) Lus10043353 [exp] 70 / 6e-15 AT5G20885 157 / 4e-49 RING/U-box superfamily protein (.1) Lus10019507 [exp] 69 / 2e-14 AT5G20885 162 / 5e-51 RING/U-box superfamily protein (.1) Lus10029456 [exp] 62 / 1e-12 AT5G10380 86 / 3e-21 RING/U-box superfamily protein (.1) Lus10005954 [exp] 65 / 2e-12 AT3G04020 111 / 7e-28 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G101000 [exp] 193 / 2e-63 AT3G61460 171 / 9e-55 brassinosteroid-responsive RING-H2 (.1) Potri.003G130900 [exp] 188 / 2e-61 AT1G63840 197 / 4e-65 RING/U-box superfamily protein (.1) Potri.002G161900 [exp] 151 / 4e-47 AT3G61460 234 / 7e-80 brassinosteroid-responsive RING-H2 (.1) Potri.014G087700 [exp] 147 / 2e-45 AT3G61460 220 / 2e-74 brassinosteroid-responsive RING-H2 (.1) Potri.011G150800 [exp] 73 / 2e-16 AT3G61460 69 / 1e-14 brassinosteroid-responsive RING-H2 (.1) Potri.014G170400 [exp] 71 / 6e-16 AT2G04240 181 / 3e-59 RING/U-box superfamily protein (.1.2) Potri.006G217000 [exp] 70 / 2e-15 AT5G20885 138 / 8e-42 RING/U-box superfamily protein (.1) Potri.007G086200 [exp] 70 / 3e-15 AT1G15100 74 / 5e-17 RING-H2 finger A2A (.1) Potri.007G086300 [exp] 68 / 1e-14 AT1G15100 79 / 5e-19 RING-H2 finger A2A (.1) Potri.009G170460 [exp] 66 / 3e-14 AT4G38140 85 / 9e-22 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10017510 pacid=23163211 polypeptide=Lus10017510 locus=Lus10017510.g ID=Lus10017510.BGIv1.0 annot-version=v1.0 ATGGGGTTCCCGGCCGTATACACGGAGCTGCTGCTTCTTCCCAAGCTCCTAATCCACGCGCTCTCCCTCCTCTTCGTTCTCCAGCGGATAATCAGCTTGA GCTTCCGCTACCTAGGCCTCCCTAATTTCTTAAATCCCAGCTCCTCCGCCGACGAAGTCTCCATTTCCCCTGCCGCGAGTTATCCGGAGCTCCAGCGATC CATGTCGGCGGTCCTCATCCGCGAGATCCTCCCCGTGGTGAAGTTCGCCGACCTAATCGACCCGCCGGAGAGCTGCGCGGTGTGCCTGTACGATTTCGAG GAAGAGGATGAAATCAGGTCTCTGGCGAATTGCAGGCACGTTTTCCACAAAGAGTGCCTGGACAGGTGGATGGGGTACGAGCGGAGAACGTGCCCGATGT GCCGGACGGCGTTGGTTCCGGAGGATATGCAGGAGAGCTTCAACGATAAGTTCTGGGCGGCTTCCGGGATCCCTGATTTTTACGGGGAGTTGTCGCCGAT TTCTGGATGGGGACGGAGCTTTGATTTCACGGTAGAAACATGA
AA sequence Show only first row Show all	>Lus10017510 pacid=23163211 polypeptide=Lus10017510 locus=Lus10017510.g ID=Lus10017510.BGIv1.0 annot-version=v1.0 MGFPAVYTELLLLPKLLIHALSLLFVLQRIISLSFRYLGLPNFLNPSSSADEVSISPAASYPELQRSMSAVLIREILPVVKFADLIDPPESCAVCLYDFE EEDEIRSLANCRHVFHKECLDRWMGYERRTCPMCRTALVPEDMQESFNDKFWAASGIPDFYGELSPISGWGRSFDFTVET

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10017510 [exp]	0	1
AT3G25900		HMT-1, ATHMT-1	Homocysteine S-methyltransfera...		Lus10041451 [exp]	1.7	0.9230
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Lus10001682 [exp]	4.0	0.8864
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10028361 [exp]	8.4	0.8728
AT2G32800		AP4.3A	protein kinase family protein ...		Lus10016674 [exp]	9.5	0.8744
AT5G13420			Aldolase-type TIM barrel famil...		Lus10043136 [exp]	10.6	0.8881
AT1G65690			Late embryogenesis abundant (L...		Lus10033705 [exp]	12.0	0.8240
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Lus10024068 [exp]	12.4	0.8936
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Lus10035909 [exp]	14.6	0.9009
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10041811 [exp]	16.2	0.8951
AT1G72220			RING/U-box superfamily protein...		Lus10015901 [exp]	18.7	0.8962

Compare expression of checked genes

Lus10017510 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.