Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63850 654 / 0 BTB/POZ domain-containing protein (.1) AT5G60050 389 / 5e-129 BTB/POZ domain-containing protein (.1) AT3G50780 347 / 3e-112 unknown protein AT2G13690 243 / 2e-72 PRLI-interacting factor, putative (.1) AT3G05675 83 / 1e-16 BTB/POZ domain-containing protein (.1.2) AT2G24692 41 / 8e-05 unknown protein AT4G10800 44 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028772 [exp] 1039 / 0 AT1G63850 707 / 0.0 BTB/POZ domain-containing protein (.1) Lus10024658 [exp] 797 / 0 AT1G63850 672 / 0.0 BTB/POZ domain-containing protein (.1) Lus10038475 [exp] 363 / 2e-118 AT5G60050 518 / 0.0 BTB/POZ domain-containing protein (.1) Lus10023336 [exp] 352 / 3e-114 AT5G60050 532 / 0.0 BTB/POZ domain-containing protein (.1) Lus10022484 [exp] 351 / 3e-114 AT3G50780 602 / 0.0 unknown protein Lus10016789 [exp] 267 / 4e-84 AT3G50780 408 / 1e-140 unknown protein Lus10033484 [exp] 224 / 3e-65 AT2G13690 478 / 7e-164 PRLI-interacting factor, putative (.1) Lus10020892 [exp] 223 / 1e-64 AT2G13690 479 / 3e-164 PRLI-interacting factor, putative (.1) Lus10040458 [exp] 107 / 2e-24 AT1G63850 84 / 5e-17 BTB/POZ domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G100900 [exp] 823 / 0 AT1G63850 696 / 0.0 BTB/POZ domain-containing protein (.1) Potri.003G131000 [exp] 754 / 0 AT1G63850 653 / 0.0 BTB/POZ domain-containing protein (.1) Potri.005G129700 [exp] 365 / 2e-119 AT3G50780 623 / 0.0 unknown protein Potri.001G233900 [exp] 364 / 2e-119 AT5G60050 533 / 0.0 BTB/POZ domain-containing protein (.1) Potri.007G032800 [exp] 359 / 6e-117 AT3G50780 654 / 0.0 unknown protein Potri.005G058700 [exp] 279 / 5e-86 AT2G13690 526 / 0.0 PRLI-interacting factor, putative (.1) Potri.007G109300 [exp] 274 / 6e-84 AT2G13690 518 / 4e-180 PRLI-interacting factor, putative (.1) Potri.004G154600 [exp] 115 / 5e-27 AT1G63850 96 / 6e-21 BTB/POZ domain-containing protein (.1) Potri.006G202900 [exp] 73 / 2e-13 AT3G05675 532 / 0.0 BTB/POZ domain-containing protein (.1.2) Potri.001G086100 [exp] 71 / 1e-12 AT3G05675 348 / 9e-117 BTB/POZ domain-containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017511 pacid=23163111 polypeptide=Lus10017511 locus=Lus10017511.g ID=Lus10017511.BGIv1.0 annot-version=v1.0 ATGGCCAGAACCACCACTACTAAATTTACTCACTCCTCCGCCGCTTCCTCTCAACCCATTAAACCCAAACACCGCCAAACCACCGTCTCCACTCCTCCAG CTCAAACCCCTCTTCCTCTTCCTCCTTCCGGCCTCTTGAATCGCTCCCGGAGTGGCCGGAAACTCCACCCTCCGACCATCGTCTCCCCTGATAAATCCTC TTGGTGCTGCCCCGCTTCGTCAAAACCCATCGTCCACTCTCCTCCCCGCCGGAGATTGCCCGACCCGGAACCCGAATCCAATATCCGGTTCTCTTCCGGC GGATTTCCCCCCGTCATGGACTTCGCAGCTCCAAACGGCCACCACTTACCTCACGAGTCTTCTACCGCTCCTTCTACTTTCCCTTCCAGCTTCACCAAGT TCAACTCTGCTCTCACGGCGGGTCTCCTCAACCCGCTGTCACCTCCGCCCGACAGGATGACCCGATCCAGCCCCACCTTGTTCGAAATGATGGCTAGCGA GCACGACATTAGTCAGCCCAAGTCCCCCCAGACTCCGATCACGATTACTGCTCCTCCTCCTGTTCCAATCTCCAAAATTCCTCAAGCCCAAGCGCCGGTT CAGGACCGGCAGACGGCGGCATTGCAGCGAATCGCTGATATCCTGGGCAACAGGAGCCCCGGGAGCCAGTTCAATGATTCCTCCTCTGGCGATGTGAAGC TGACTTTGAGTTCCAAAGACGGGATCGGCGTTTCGATCAGTGTTCATAGGCAGATCCTGGTGGCGCACAGCAGGTTCTTCGCGGTGAAGCTCTCCGATCG GTGGGCGAAACAACAACAGAAACCTTCTTCCGGGCCATACGGCGTGGAGATCGCCGATTGTGATGATATCGAGGTTTACATTGAGACTTTGCGGTTAATG TACTCCAAGGATCTCAGGAGGAGACTCATGAAGGATGATGTTACCAAAGTTCTTGGCATTCTCAAGGTTTCAGCAGCAATAGGGTTTGACGCTGGAGTTC TATCTTGTTTGGAGTACTTGGAAGCAGCTCCATGGGCAGAGGACGAAGAAGACAAAGTAGCTTCACTTCTATCAGAGCTACGTCTAGAAGGGGTAGGGGC AGGGGAAGTTCTAAAGAGGATGTCTGATGAAGTAAGCAATGGAGGAGTAGAAGAGAACGGTATTGATAATAATGAAGAAGTGCTTCTCAAGCTTCTGCAT GTAGTTCTCGAAGGAAAAGACGAGAAAGCTCGACGAGAAATGAAAGGACTTATTGCGAAAATGCTCCGGGAGAGTTCCTCGCAGACCGATCTTCGGAAGG AGTCTTTATACTCGGCTTGCGAAGGGTGTCTGGAGCTGCTTCAGACGCATTTTCTCGAGGCAGCATCAGGGAACTTGAAGGATGCTGGTCAGATCGCTCG ACAAGCCGACAATCTACATTGGTTGTTGGATATTATGATCGACAGACAGATAGCCGAGGAGTTTCTCCAAACATGGGCATCGCAGACTGAACTTTCGGAA GTACATTCCAAGATTCCTGCTGTCCATAGGTACGAGGTGAGTAGAATTACGGCGAGGCTGTTCATTGGGGTTGGGAAAGGGCAGATGTTGGCTTCGAAAG AGGCAAGGTGTATGCTTCTGCAGACATGGCTGGTTCCTTTTTACGACGATTTCGGATGGATGAGGAGGGCACATAAGGGTCTCGACAGGCATTTGATTGA GGACGGTCTTGGTAACACCATTCTAACCCTGCCGTTGTCTTGGCAGCAAGATATTTTGCTTGCCTGGTTCGACCGGTTTTTGAACTCGGGTGAAGATTGT CCCAACATTCAGAGAGGGTTTGAAATCTGGTGGAGACGGGCGTTCTGGAGGCGCACTGGGGAGCAAGGACGGACACGGTCTTTTAGAGTCGTTTCCACAA AAGCTGATAACTTGTGA
AA sequence Show only first row Show all	>Lus10017511 pacid=23163111 polypeptide=Lus10017511 locus=Lus10017511.g ID=Lus10017511.BGIv1.0 annot-version=v1.0 MARTTTTKFTHSSAASSQPIKPKHRQTTVSTPPAQTPLPLPPSGLLNRSRSGRKLHPPTIVSPDKSSWCCPASSKPIVHSPPRRRLPDPEPESNIRFSSG GFPPVMDFAAPNGHHLPHESSTAPSTFPSSFTKFNSALTAGLLNPLSPPPDRMTRSSPTLFEMMASEHDISQPKSPQTPITITAPPPVPISKIPQAQAPV QDRQTAALQRIADILGNRSPGSQFNDSSSGDVKLTLSSKDGIGVSISVHRQILVAHSRFFAVKLSDRWAKQQQKPSSGPYGVEIADCDDIEVYIETLRLM YSKDLRRRLMKDDVTKVLGILKVSAAIGFDAGVLSCLEYLEAAPWAEDEEDKVASLLSELRLEGVGAGEVLKRMSDEVSNGGVEENGIDNNEEVLLKLLH VVLEGKDEKARREMKGLIAKMLRESSSQTDLRKESLYSACEGCLELLQTHFLEAASGNLKDAGQIARQADNLHWLLDIMIDRQIAEEFLQTWASQTELSE VHSKIPAVHRYEVSRITARLFIGVGKGQMLASKEARCMLLQTWLVPFYDDFGWMRRAHKGLDRHLIEDGLGNTILTLPLSWQQDILLAWFDRFLNSGEDC PNIQRGFEIWWRRAFWRRTGEQGRTRSFRVVSTKADNL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63850			BTB/POZ domain-containing prot...		Lus10017511 [exp]	0	1
AT3G44610			Protein kinase superfamily pro...		Lus10020572 [exp]	2.0	0.8935
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10042246 [exp]	4.5	0.8979
AT4G28230			unknown protein		Lus10031619 [exp]	7.4	0.8873
AT3G48590	CCAAT	NF-YC1, ATHAP5A...	"nuclear factor Y, subunit C1"...		Lus10022444 [exp]	11.4	0.8712
AT3G21400			unknown protein		Lus10037507 [exp]	15.0	0.8595
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10031909 [exp]	15.0	0.8764
AT5G20590		TBL5	TRICHOME BIREFRINGENCE-LIKE 5 ...		Lus10011932 [exp]	15.9	0.8934
AT3G26400		EIF4B1	eukaryotic translation initiat...		Lus10011412 [exp]	17.4	0.8885
AT5G02820		BIN5, RHL2	ROOT HAIRLESS 2, BRASSINOSTERO...		Lus10015052 [exp]	17.5	0.8671
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Lus10001713 [exp]	17.9	0.8803

Compare expression of checked genes

Lus10017511 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.