Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41410 280 / 7e-86 HD BEL1 BELL 1, POX (plant homeobox) family protein (.1) AT4G36870 233 / 6e-67 HD BLH2, SAW1 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) AT2G23760 219 / 7e-63 HD BLH4, SAW2 SAWTOOTH 2, BEL1-like homeodomain 4 (.1.2.3) AT2G16400 183 / 5e-51 HD BLH7 BEL1-like homeodomain 7 (.1) AT1G19700 177 / 4e-48 HD BEL10, BLH10 BEL1-like homeodomain 10 (.1.2.3) AT1G75410 176 / 6e-48 HD BLH3 BEL1-like homeodomain 3 (.1.2) AT4G34610 176 / 7e-48 HD BLH6 BEL1-like homeodomain 6 (.1.2) AT2G35940 175 / 1e-46 HD BLH1, EDA29 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) AT2G27220 138 / 3e-35 HD BLH5 BEL1-like homeodomain 5 (.1.2) AT1G75430 130 / 1e-33 HD BLH11 BEL1-like homeodomain 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028770 [exp] 633 / 0 AT5G41410 344 / 2e-110 BELL 1, POX (plant homeobox) family protein (.1) Lus10032292 [exp] 248 / 2e-74 AT5G41410 309 / 6e-98 BELL 1, POX (plant homeobox) family protein (.1) Lus10016790 [exp] 197 / 3e-56 AT4G36870 371 / 2e-121 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Lus10022485 [exp] 201 / 2e-55 AT4G36870 398 / 5e-128 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Lus10004201 [exp] 199 / 4e-55 AT2G35940 504 / 1e-170 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10029405 [exp] 197 / 1e-54 AT2G35940 478 / 9e-161 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10000184 [exp] 181 / 2e-48 AT4G34610 447 / 7e-151 BEL1-like homeodomain 6 (.1.2) Lus10028802 [exp] 180 / 3e-48 AT4G34610 447 / 1e-150 BEL1-like homeodomain 6 (.1.2) Lus10017481 [exp] 179 / 5e-48 AT4G34610 424 / 1e-141 BEL1-like homeodomain 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G100800 [exp] 412 / 7e-136 AT5G41410 440 / 4e-147 BELL 1, POX (plant homeobox) family protein (.1) Potri.003G131300 [exp] 406 / 1e-133 AT5G41410 434 / 2e-144 BELL 1, POX (plant homeobox) family protein (.1) Potri.007G032700 [exp] 233 / 1e-66 AT4G36870 475 / 7e-157 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Potri.005G129500 [exp] 223 / 7e-63 AT4G36870 449 / 1e-146 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Potri.004G159300 [exp] 204 / 4e-57 AT4G34610 416 / 2e-138 BEL1-like homeodomain 6 (.1.2) Potri.009G120800 [exp] 201 / 5e-56 AT4G34610 418 / 2e-139 BEL1-like homeodomain 6 (.1.2) Potri.016G069700 [exp] 197 / 2e-54 AT2G35940 501 / 1e-169 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.006G203000 [exp] 192 / 1e-52 AT2G35940 491 / 9e-166 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.002G031000 [exp] 184 / 9e-50 AT2G16400 345 / 8e-112 BEL1-like homeodomain 7 (.1) Potri.001G216600 [exp] 174 / 4e-46 AT2G35940 377 / 7e-121 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07526 [flax] [poplar] POX Associated with HOX
Representative CDS sequence Show only first row Show all	>Lus10017513 pacid=23163178 polypeptide=Lus10017513 locus=Lus10017513.g ID=Lus10017513.BGIv1.0 annot-version=v1.0 ATGGAAAGTAGCAGCGAAGAAGAGGCAAAAGGAATTAGCGGAGGAGAAGAAGGAGCTCAATTCTCCTACCCGATGATCAACCCCCACCACCACCAAAATC AGATCCACCACAACACGAGCTTCCAATCAACAGCGCCGCCGCCGCCGCCTTCCTCTGACATGTTCAACGAAGAAATGATACATCACTCCTCCTCCATCTG GAAACCCTTCTTCCCCAAAGACGGCGGAAGCGGAGGAAGCGGATCCCCAAAGTCCACCCCAGCAGGAGACGATCATGAGTTCTACCAGTTCAACCCAACG GCCGGGATGATGACGTCGACGGTGGATGAGGATCCGAACAATAATAACAATCCGCCTCCACCGCCGCCAAGGAGTAGCAGTACTCTCTCGCTTTCTCTCT CCTCCACCATCGGCCTCCAGCAACAGAATCAGATGGCGGCGGCGGCCATGTTACAAACCGGCGGGAATATGAATCCGAGTCTGTACGAGTTTGAATTGAG AAGGTCAAGGTATATGGTAGCGGCGCAGGAACTTTTAAACGAGTTCTGCAGCCTTGGTAGTAGTACAAAACAAACAGATGCCAAACAGCCCCTGAAATCC AAACCCTTGGATGTCGACGACGACGACGACAACGATGATACTTCTTCCTCCTCCTCCAGAAGGATAAAGCCGTCTCCTGGTTCCCTTGAATTTCTTGAGC TCCAGAAGCGCAAGACTAAGCTCTACTCCCTACTCGAAGAGGTGGATAGGAAGTACAGGCACTACTGCGAGCAAATGAAGGCGGTGGTGTCGTCGTTCGA GTCGGTGGCCGGAGCGGGGGCTGCGGGGGTATACTCGGTGTTGGCGTCAAAGGCAATGTCGAGGCACTTCAGGTGTCTGAGAGACGGAATCGTGGCGCAA ATCCAGGCGACGAGGAAGACGATGGGGGAGAAAGATCCAGTGGCTCCGGGGACGACGAGAGGGGAAACGCCGAGGTTGAAGGTGATAGACCAGACGATAA GGCAGCACAAGGCGTTCCAGCAGATGAACATGATGGAGTCTCATCCTTGGCGCCCCCAGCGTGGCCTCCCTGAGAGATCCGTCTCCGTCCTCCGCGCCTG GCTCTTCGAGCATTTCCTCCATCCGTACGTCGTAGTGTCCAATTGGTTTATTAATGCAAGAGTGAGGCTATGGAAGCCAATGGTGGAAGAACTGTATGTT GAAGAAACAAAAGACCATGAAGACAATCTCTTCAACAACAACAACAACAATCTCATGTTGACTTCCTCGGATGGCGAAGTAGCTACTACCTTTGATGACC ACAATCTTCAAGACGACGACAACAACAACATGAACATCCGGATGCTTAGTAGTAGCACAAGTAATTACCTTTCGTCGTCGGATCAGAAGCCAACACAAGA CCAGCTCATCCGATTAGACCCCGATTGCCTCTCATCCATCATCTCCAACTCTGATCATCATAAGGCCTTCCAAAACCACCACCAAGAACAACAACAACAT ATGGCTCAAAACCAAAACCATGCCGGGTTCGGAGCATTTGGGGCAGTGGAGCTTGACCATTTCTCGGCATACAATCACCAAAGTTCAACATCTACATCTC ATTTGCATCATCATCATCATCATCATCATCAACAGCAATTAGGAGGAGGGGTGTCCTTAACCCTAGGGTTGCAACAGCATGGTGGTGGGGGTGGAGGAGT TAGCTTGGCGTTCACTCCAGTAGCATCACAAAGTAGTAATCTTTTCTTCCCTAGAGACCACAATATCGAACAACAAGAACAGGTTCATCATCATCATCAA TACTCACTACTTGAAGGAGATCATGATCAAGGACAAAACTTGCCTTACAGGAACTTGATGGGTGCTCAGCTTCTACGTGACTTCGCCGGATGA
AA sequence Show only first row Show all	>Lus10017513 pacid=23163178 polypeptide=Lus10017513 locus=Lus10017513.g ID=Lus10017513.BGIv1.0 annot-version=v1.0 MESSSEEEAKGISGGEEGAQFSYPMINPHHHQNQIHHNTSFQSTAPPPPPSSDMFNEEMIHHSSSIWKPFFPKDGGSGGSGSPKSTPAGDDHEFYQFNPT AGMMTSTVDEDPNNNNNPPPPPPRSSSTLSLSLSSTIGLQQQNQMAAAAMLQTGGNMNPSLYEFELRRSRYMVAAQELLNEFCSLGSSTKQTDAKQPLKS KPLDVDDDDDNDDTSSSSSRRIKPSPGSLEFLELQKRKTKLYSLLEEVDRKYRHYCEQMKAVVSSFESVAGAGAAGVYSVLASKAMSRHFRCLRDGIVAQ IQATRKTMGEKDPVAPGTTRGETPRLKVIDQTIRQHKAFQQMNMMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYVVVSNWFINARVRLWKPMVEELYV EETKDHEDNLFNNNNNNLMLTSSDGEVATTFDDHNLQDDDNNNMNIRMLSSSTSNYLSSSDQKPTQDQLIRLDPDCLSSIISNSDHHKAFQNHHQEQQQH MAQNQNHAGFGAFGAVELDHFSAYNHQSSTSTSHLHHHHHHHHQQQLGGGVSLTLGLQQHGGGGGGVSLAFTPVASQSSNLFFPRDHNIEQQEQVHHHHQ YSLLEGDHDQGQNLPYRNLMGAQLLRDFAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10017513 [exp]	0	1
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10040252 [exp]	2.8	0.9255
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10009703 [exp]	3.0	0.9005
AT3G24420			alpha/beta-Hydrolases superfam...		Lus10033087 [exp]	3.3	0.9281
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10002243 [exp]	4.5	0.9209
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10003471 [exp]	6.0	0.9223
AT5G02890			HXXXD-type acyl-transferase fa...		Lus10011003 [exp]	7.4	0.8944
AT1G11340			S-locus lectin protein kinase ...		Lus10020052 [exp]	12.0	0.9116
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10016685 [exp]	12.6	0.9177
AT5G23210		SCPL34	serine carboxypeptidase-like 3...		Lus10010190 [exp]	12.7	0.8711
AT5G02890			HXXXD-type acyl-transferase fa...		Lus10000592 [exp]	15.4	0.9105

Compare expression of checked genes

Lus10017513 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.