Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23490 749 / 0 Protein of unknown function (DUF604) (.1) AT5G41460 749 / 0 Protein of unknown function (DUF604) (.1) AT4G11350 721 / 0 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) AT1G01570 553 / 0 Protein of unknown function (DUF604) (.1) AT1G07850 535 / 0 Protein of unknown function (DUF604) (.1) AT4G00300 486 / 2e-164 fringe-related protein (.1.2) AT2G37730 403 / 1e-135 Protein of unknown function (DUF604) (.1) AT1G33250 369 / 4e-122 Protein of unknown function (DUF604) (.1) AT4G15240 337 / 3e-110 Protein of unknown function (DUF604) (.1) AT1G05280 336 / 3e-110 Protein of unknown function (DUF604) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032293 [exp] 847 / 0 AT4G23490 740 / 0.0 Protein of unknown function (DUF604) (.1) Lus10018123 [exp] 603 / 0 AT5G41460 589 / 0.0 Protein of unknown function (DUF604) (.1) Lus10036382 [exp] 573 / 0 AT4G11350 580 / 0.0 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) Lus10024662 [exp] 490 / 8e-174 AT4G23490 441 / 5e-155 Protein of unknown function (DUF604) (.1) Lus10028769 [exp] 451 / 4e-159 AT4G23490 370 / 1e-127 Protein of unknown function (DUF604) (.1) Lus10007923 [exp] 398 / 9e-135 AT4G11350 397 / 5e-135 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) Lus10008293 [exp] 374 / 2e-124 AT1G33250 611 / 0.0 Protein of unknown function (DUF604) (.1) Lus10027153 [exp] 371 / 1e-123 AT1G05280 479 / 4e-167 Protein of unknown function (DUF604) (.1) Lus10039692 [exp] 349 / 2e-115 AT1G05280 476 / 3e-166 Protein of unknown function (DUF604) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G100700 [exp] 842 / 0 AT4G23490 757 / 0.0 Protein of unknown function (DUF604) (.1) Potri.003G131400 [exp] 839 / 0 AT5G41460 732 / 0.0 Protein of unknown function (DUF604) (.1) Potri.009G026300 [exp] 607 / 0 AT1G07850 637 / 0.0 Protein of unknown function (DUF604) (.1) Potri.012G107800 [exp] 548 / 0 AT4G23490 546 / 0.0 Protein of unknown function (DUF604) (.1) Potri.011G147300 [exp] 380 / 2e-126 AT1G33250 648 / 0.0 Protein of unknown function (DUF604) (.1) Potri.006G089150 [exp] 376 / 2e-125 AT2G37730 626 / 0.0 Protein of unknown function (DUF604) (.1) Potri.016G101200 [exp] 372 / 1e-123 AT2G37730 618 / 0.0 Protein of unknown function (DUF604) (.1) Potri.001G454600 [exp] 371 / 6e-123 AT1G33250 629 / 0.0 Protein of unknown function (DUF604) (.1) Potri.017G039600 [exp] 367 / 3e-122 AT1G05280 479 / 3e-167 Protein of unknown function (DUF604) (.1) Potri.008G058900 [exp] 344 / 4e-113 AT3G11420 493 / 1e-171 Protein of unknown function (DUF604) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF04646 [flax] [poplar] DUF604 Protein of unknown function, DUF604
Representative CDS sequence Show only first row Show all	>Lus10017514 pacid=23163119 polypeptide=Lus10017514 locus=Lus10017514.g ID=Lus10017514.BGIv1.0 annot-version=v1.0 ATGAAAGGTAGCCAGAAAGATCCAGAGAAGATCATCTGGGATCAGATGAGGAGCCCTTCTCACCCCAATTCCATCTCCGGCCCCGGTTCTCAAGCTCGGC TCCTCCCCAAGCTCATGGCCTCCCTCTTGCTCTTCGTCACCGTCACCTACATTTTCTACACTCTGAAGCTCGTCTCCACTTCCTGCAACCACGAGCCCTT CTCCTCCTCCACCCGCCACCTCTCCCTCGCCACCACCAACAACCACTCCGACATCGCTGCTACGGAAGTCTCTCTCGCCCGCCGCCGCGAGATCGAGGAG ACGACGTCGACGACGGCGTCATCTTCTAACAAGACGGATTTGCAGCATATAGTCTTCGGAATCGCTGCCTCGGCCAAGCTATGGGAGCAGAGGAAGAACT ACATCAAGATTTGGTACAAGGCCGACAAAATGAGGGGCGTTGTTTGGATGGATGACGAGGTCGCTACCGACAAAAGAGACGACCGCGAAGACGGCGGACT CCCTCCGATTAAAATCTCCGGCGATACATCCAAGTTCGTGTACAAAAACAGGCAGGGGCATCGCTCCGCGATTCGGATCTCGCGGATTGTCTCCGAGACG CTCCGCCTGGGGCTGGACAATGTGCGGTGGTTCGTGATGGGGGACGACGACACCGTCTTCGTCACCGAGAATCTGGTCCAGATCCTCCGCAAGTACGACC ACACCCAGTACTATTACATCGGGAGCTTGTCCGAGTCTCATTTGCAGAACATCTATTTCTCTTACGGAATGGCGTACGGCGGCGGCGGGTTCGCCATCAG CTACCCGCTCGCCGTCGCGCTCGAGAAGATGCAGGACCGCTGTATCCAGCGCTACCCTGGTCTTTACGGCTCCGACGATAGAATGCAGGCTTGTATGGCC GAGCTCGGCGTTCCCCTCACCAAGGAAGTCGGCTTTCACCAGTATGATGTGTACGGGAATCTCTTTGGACTACTAGCATCACACCCGGTGACGCCATTAG TATCCCTGCATCACCTCGACGTGGTCGAACCCATCTTCCCAAACGCAACCCGAGTCGAGGCGCTTCAGAGGCTAACCGTGCCAATGCAGATGGACTCGGC CGGGCTAATGCAGCAATCGATCTGCTACGACAAGTCCAGGAGCTGGACCGTGTCAGTCTCGTGGGGGTTCGCCGTACAGATCTTCCGGGGAGTGTCCTCG CCTCGTGAGATAGAAATGCCATCGAGGACGTTTTTAAATTGGTACAGAAGAGCCGACTACACGGCGTATGCTTTCAACACTCGCCCAGTCAGCACGAACC CTTGCCAGAAGCCGTTTGTGTTTTACATGTCGAAGACGAGATTCGTGAAATCGTTGAACACCACGGTGAGCGAGTACGAAAAGCATCGTGTTCCTCACCC GGAATGCCGGTGGAAGATGGCCGATCCGTCCAATATTACGATGGCGATTGTGTACAAACGGCCGGACCCTCATCTGTGGAACAGGTCTCCGAGAAGGAAC TGTTGCAGGGTGATGAGCATAAAGAAGAAAGGAACCATTACGATCGATGTAGGGGAATGTAGAGATGGTGAAGTCAGTGAAGTATAA
AA sequence Show only first row Show all	>Lus10017514 pacid=23163119 polypeptide=Lus10017514 locus=Lus10017514.g ID=Lus10017514.BGIv1.0 annot-version=v1.0 MKGSQKDPEKIIWDQMRSPSHPNSISGPGSQARLLPKLMASLLLFVTVTYIFYTLKLVSTSCNHEPFSSSTRHLSLATTNNHSDIAATEVSLARRREIEE TTSTTASSSNKTDLQHIVFGIAASAKLWEQRKNYIKIWYKADKMRGVVWMDDEVATDKRDDREDGGLPPIKISGDTSKFVYKNRQGHRSAIRISRIVSET LRLGLDNVRWFVMGDDDTVFVTENLVQILRKYDHTQYYYIGSLSESHLQNIYFSYGMAYGGGGFAISYPLAVALEKMQDRCIQRYPGLYGSDDRMQACMA ELGVPLTKEVGFHQYDVYGNLFGLLASHPVTPLVSLHHLDVVEPIFPNATRVEALQRLTVPMQMDSAGLMQQSICYDKSRSWTVSVSWGFAVQIFRGVSS PREIEMPSRTFLNWYRRADYTAYAFNTRPVSTNPCQKPFVFYMSKTRFVKSLNTTVSEYEKHRVPHPECRWKMADPSNITMAIVYKRPDPHLWNRSPRRN CCRVMSIKKKGTITIDVGECRDGEVSEV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41460			Protein of unknown function (D...		Lus10017514 [exp]	0	1
AT4G23490			Protein of unknown function (D...		Lus10028769 [exp]	1.4	0.9165
AT1G49970		SVR2, NCLPP5, C...	SUPPRESSOR OF VARIEGATION 2, N...		Lus10003953 [exp]	4.2	0.8900
AT5G02190		EMB24, ATASP38,...	PROMOTION OF CELL SURVIVAL 1, ...		Lus10010854 [exp]	4.7	0.8661
AT1G06190			Rho termination factor (.1.2)		Lus10024898 [exp]	5.8	0.9023
AT2G38530		cdf3, LP2, LTP2	cell growth defect factor-3, l...		Lus10025152 [exp]	5.9	0.8511
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Lus10041031 [exp]	8.2	0.8512
AT5G63980		SUPO1, RON1, AL...	suppressors of PIN1 overexpres...		Lus10015663 [exp]	8.5	0.8504
AT1G66430			pfkB-like carbohydrate kinase ...		Lus10009126 [exp]	8.8	0.8786
AT1G06190			Rho termination factor (.1.2)		Lus10022920 [exp]	9.6	0.8985
AT2G36885			unknown protein		Lus10026542 [exp]	10.7	0.8337

Compare expression of checked genes

Lus10017514 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.