Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G126300 [exp] 1049 / 0 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12231 [flax] [poplar] Rif1_N Rap1-interacting factor 1 N terminal
Representative CDS sequence Show only first row Show all	>Lus10017515 pacid=23163117 polypeptide=Lus10017515 locus=Lus10017515.g ID=Lus10017515.BGIv1.0 annot-version=v1.0 ATGTCGAGTCCCTCCGATCTGATGAAAGAAATCACAGATTTCATACACTCCAACTCCAAGCCTAACAAGTCGGCCGGTTACTCTTCTCTACTCCACTTCC AGGAGCAGGCAAGCGAGGATGCTTCTCTGATACGAATCCTTGCTGATGGTTCTCAGGCTCTGATCTCTATGATCCTCACTGACATATCCGACGACGATGA AGAAATTGCGGCGCAGGCATTGAAATGCCTGGGATTCATCATTTACCACCCTGCCATTGTTACTGAAATTCCAGTTGACCAAGCCAGCTTGGTATTGGAC GAACTGGCCAAGGTCGTGATGATGACGAGAATCAAGGCAGTCTGTAATTTATGTGTATGGTGTATATCTATGCAACAATTTGATGCAGCTGCTCTAGCTG CTCGTTTTAATATGGTGTTGCGAGCAGTGGTTCACGCCCTTGACAATCCTAATGGATCACTGTCTACGACATTTGAAGCGGTCCAGGCTGTTATGAAGTT GGCAGCCCAAATAAGCGAGCAGATGAGAGATTTTTCACACATTTGGGCTCCTCCAATATATCGAAGACTTGTCAGCATTGAGAGGCGAGAAAGGGATATT GCTGAGAGATGTCTTTTGAAAACTAAGTCACTACTACTGCCTGCTTCTGCTGCTCTATCTAAGATACTTGCTAATGATGTGAAAAGGAATCTGCTACCAA GCATGAAAAGTCTTTTAAACAATGGTATGAAAATTCAGACCATGCAAGCATGGGGATGGTTTGTTCGCCTCTTGGGATATTATGTTGTGAAGAATCGTAA TCTATTGAATGACATGCTCAAAATTCCACAGCAGACGTTCACCGACCATAACCCGCAGGTGCAGATTGCTTCACAGGTTGCATGGGAAGGTCTTATTGAT GCTCTGATCAAAATTCCACTGTTAAGTTGTGAGAATAATGAAGCACTCGAGAAGAATGCTCAACTAGTGCAAACTTCTACTGTGAGTGGCTCTCAAATCC TACCAAATGGTCTTTTGAAAAGCATAAAGCTTGTAATGAAGCCTTTGATGGGCCTTATAATGAGTAAATGTGACGCAAGTGTTCACTCTCAATGCTTCAA CACTTGGTTATACTTGTTACATAAACTCGATATCTGGATTAACCATCCATCAGTAGTACAGTTGGTGTTGGCTCCAGTTCTTGAAGCAGTTTTTAAGATG GGTCCTGATACTAGAACTAGTTGGCTATGGACCATCTGCCTAGAAATGCTTGAAGATTTTGTATTTGTGAAATCAAGGGATCTCAATAGCAAAGTGAACT GCAAAGCAAGCCATCATTTATCAACTCAATCGCCTACTATGCAAGATTCAGTACCAGGCAAATCCTTATGGGAACATCATCCTATAAAATGGCAGCAATG GGGTATTAATCAACTGGATTTTCTCCTAAGGACTGTAAGCATAATCATGAGTCACAAAACAACCGAAGCGGAATATAGACAATCAGCATTTGATGGAGTA AGAAGGATATTCAAGGCCATTGTAAACAGGGTTCAGTTGGAACTCAAGAGTGCATCAATAAGTTTTGCTGACATCATGTTTTGTCTGAATACATTGCTGT GTTTTATGAAGCAGACATGTGAAGCTGCAGTTTCAAAAGGCAGTGATGGTGATGAAGAATCTCTTACTTGTCTTCAGTTTGTGGAGGTTATCATTGAAGA ATTACAACCTACTGTACTGGGATCCCCTTTGTACAAGGTGTCTTTAGACCTTGCATTCCTTCAGAATCTGTCATCTCCGACTGACAGCATGGATGTAAAC TTATTGGCGTTGACCTCCATTTCTTATATGGAAAAAGTTACACCATTAGCTTACATCATCACAGTTTATATGTGCACTATGATTAGGTCAACATTCCACG GAGATGCAATGAAGTTAGCATTTCTGAGAGCACGGAATATTTTCAAGTTGATATGGCGTTCATCTGAATCTTGGGAACATATTTATATCCCAGTTTGTTT GTTGCATAGACATACTGGGTATGCGCACTTGGGAGAGTTATGGATTGTTTTAGCTAAAAGCTTCAAAGATTGCATTGATGATGGATCGATTATTCCACTT ATAACTGAAGTTGATAAGGAAGTTGGTTACCCTGTGATTTGCCAGTTATTATTGTGTCCATTCGTCACTCACTTTCAGACCAAATCCACACTTAAGGCAG TCGGTGGCTCTTGGAAAAAAAATCTTGATCCAGGAGAAAGGAAGTTGGAGTTGGAACACACTGTTGAAGCTTGGAAGTCACTCTATGTAACGTTTTGTAA CTTAGACTGTTCTGCCATAAAGGGAGGCAGGCTGTCTGAGGAGTTGTGTGCATTGTTGAGTGAGTTCTTAGGCGAACATCCTGGCACCAAGTTGGATACA ATCGATGGGGGCCTCGTTTCTTTATGTGGTAATGCTCTCGCTTGCATTTTGCAACATATCAATCAAGCTGATTCAGCTAGAAACAAGAGCAGAAATGTTG CAGATCATCAAACATTGAACAGCTTTGAAAATAGGCTGGCCTTTTCTGCCAGATTCCTTAGTTTGCCATGGGAAGAAATGGAGCAAAGTCAACTTGCTGA TCTTTCTGTAGTTTCAAGGGTATTTTCAGCATTAGCAGATGTAGCATCTTCTCTCCATTCAAAGCATACTATCCTCTTATTTGTGGAGATAATAGGTTCC CCTATTATCCAGTGGCTATCACACGAAAGATTACAGGAGGAAAATCCCATAATAGATCAAATCAGCCGTTTGTGGGGCGAAATCCTGAGGTCTTTGCAGA GGAGCCAGCCACCGATCCCTTTCGATTCGTCTCTCTTGAAACATCAGGAGCCCCTGCTACGAAAAACTCTCGACCATCCAGTTCCGTCCATATCCGAAGT GACCATATCTTTCTGGAATTCAACATATGGTCGGCAGTTGAAGTTAGACTACCCTGATAGGCTGTCCAGAAGCAACAGAATCAACCTCGGCAAGACTTCC CCTCCTCCCGTTCTTTCAAAATGTAACTCAAGACTATCACTGCCTTCAGGTAGTAAGTACAACGTAATTGCAACAACAAACAACATGAACTCGAAAAGAG TGGAGATAATGGAGGAGGATCAACAGCACCACATGATCTCGAGAAAACCAAGCTCAAAGAGAAAGAGGCTGGAGCTAACTGAACACCAGAGAGAAGTAAG ACGTGCACAGCAGGGAAGGACGATGGATTGCAACGGCCATGGTCCTGGCATCCGGACTTACACCGGAGTTGATTTCTCTCAAGGGAACGAAGACTCGCAG GAATCTCAGGAGCTCAGGAATTCAGAAGCTATCTTGGAGCTGTTAAAGAAGAATTGA
AA sequence Show only first row Show all	>Lus10017515 pacid=23163117 polypeptide=Lus10017515 locus=Lus10017515.g ID=Lus10017515.BGIv1.0 annot-version=v1.0 MSSPSDLMKEITDFIHSNSKPNKSAGYSSLLHFQEQASEDASLIRILADGSQALISMILTDISDDDEEIAAQALKCLGFIIYHPAIVTEIPVDQASLVLD ELAKVVMMTRIKAVCNLCVWCISMQQFDAAALAARFNMVLRAVVHALDNPNGSLSTTFEAVQAVMKLAAQISEQMRDFSHIWAPPIYRRLVSIERRERDI AERCLLKTKSLLLPASAALSKILANDVKRNLLPSMKSLLNNGMKIQTMQAWGWFVRLLGYYVVKNRNLLNDMLKIPQQTFTDHNPQVQIASQVAWEGLID ALIKIPLLSCENNEALEKNAQLVQTSTVSGSQILPNGLLKSIKLVMKPLMGLIMSKCDASVHSQCFNTWLYLLHKLDIWINHPSVVQLVLAPVLEAVFKM GPDTRTSWLWTICLEMLEDFVFVKSRDLNSKVNCKASHHLSTQSPTMQDSVPGKSLWEHHPIKWQQWGINQLDFLLRTVSIIMSHKTTEAEYRQSAFDGV RRIFKAIVNRVQLELKSASISFADIMFCLNTLLCFMKQTCEAAVSKGSDGDEESLTCLQFVEVIIEELQPTVLGSPLYKVSLDLAFLQNLSSPTDSMDVN LLALTSISYMEKVTPLAYIITVYMCTMIRSTFHGDAMKLAFLRARNIFKLIWRSSESWEHIYIPVCLLHRHTGYAHLGELWIVLAKSFKDCIDDGSIIPL ITEVDKEVGYPVICQLLLCPFVTHFQTKSTLKAVGGSWKKNLDPGERKLELEHTVEAWKSLYVTFCNLDCSAIKGGRLSEELCALLSEFLGEHPGTKLDT IDGGLVSLCGNALACILQHINQADSARNKSRNVADHQTLNSFENRLAFSARFLSLPWEEMEQSQLADLSVVSRVFSALADVASSLHSKHTILLFVEIIGS PIIQWLSHERLQEENPIIDQISRLWGEILRSLQRSQPPIPFDSSLLKHQEPLLRKTLDHPVPSISEVTISFWNSTYGRQLKLDYPDRLSRSNRINLGKTS PPPVLSKCNSRLSLPSGSKYNVIATTNNMNSKRVEIMEEDQQHHMISRKPSSKRKRLELTEHQREVRRAQQGRTMDCNGHGPGIRTYTGVDFSQGNEDSQ ESQELRNSEAILELLKKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10017515 [exp]	0	1
AT5G64630		MUB3.9, NFB1, N...	FASCIATA 2, Transducin/WD40 re...		Lus10033489 [exp]	3.6	0.9010
AT1G08840		EMB2411	embryo defective 2411, DNA rep...		Lus10010991 [exp]	5.2	0.8873
AT1G29630			5'-3' exonuclease family prote...		Lus10002782 [exp]	8.1	0.8643
AT5G22110		DPB2, CYL2, DBP...	CYCLOPS 2, DNA polymerase epsi...		Lus10042296 [exp]	8.3	0.8935
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Lus10036982 [exp]	9.1	0.9000
AT3G05480		ATRAD9	cell cycle checkpoint control ...		Lus10020646 [exp]	10.2	0.8669
AT3G20020		ATPRMT6	ARABIDOPSIS THALIANA PROTEIN A...		Lus10010162 [exp]	11.7	0.8725
AT1G18090			5'-3' exonuclease family prote...		Lus10027250 [exp]	13.6	0.8894
AT3G09080			Transducin/WD40 repeat-like su...		Lus10017180 [exp]	15.7	0.8798
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Lus10019443 [exp]	17.0	0.8779

Compare expression of checked genes

Lus10017515 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.