Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20250 1117 / 0 RS6, DIN10 raffinose synthase 6, DARK INDUCIBLE 10, Raffinose synthase family protein (.1.2.3.4) AT3G57520 851 / 0 RS2, ATSIP2 raffinose synthase 2, seed imbibition 2 (.1.2.3) AT1G55740 785 / 0 RS1, ATSIP1 raffinose synthase 1, seed imbibition 1 (.1) AT5G40390 538 / 0 RS5, SIP1 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) AT4G01970 290 / 8e-86 RS4, ATSTS raffinose synthase 4, stachyose synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007537 [exp] 842 / 0 AT3G57520 1235 / 0.0 raffinose synthase 2, seed imbibition 2 (.1.2.3) Lus10027679 [exp] 541 / 0 AT5G40390 1040 / 0.0 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Lus10022240 [exp] 322 / 6e-102 AT5G40390 744 / 0.0 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Lus10022241 [exp] 229 / 4e-69 AT5G40390 342 / 2e-112 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Lus10008771 [exp] 172 / 2e-49 AT5G40390 339 / 1e-112 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Lus10039946 [exp] 93 / 9e-22 AT5G40390 123 / 9e-38 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Lus10039945 [exp] 84 / 4e-18 AT5G40390 164 / 8e-58 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Lus10014902 [exp] 63 / 2e-10 AT5G55500 254 / 2e-81 "beta-1,2-xylosyltransferase", ARABIDOPSIS THALIANA BETA-1,2-XYLOSYLTRANSFERASE, beta-1,2-xylosyltransferase (.1) Lus10041370 [exp] 56 / 7e-09 AT5G40390 71 / 8e-15 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G065700 [exp] 1165 / 0 AT5G20250 1154 / 0.0 raffinose synthase 6, DARK INDUCIBLE 10, Raffinose synthase family protein (.1.2.3.4) Potri.018G126400 [exp] 1150 / 0 AT5G20250 1218 / 0.0 raffinose synthase 6, DARK INDUCIBLE 10, Raffinose synthase family protein (.1.2.3.4) Potri.006G052800 [exp] 840 / 0 AT3G57520 1290 / 0.0 raffinose synthase 2, seed imbibition 2 (.1.2.3) Potri.016G054700 [exp] 818 / 0 AT3G57520 1278 / 0.0 raffinose synthase 2, seed imbibition 2 (.1.2.3) Potri.011G166700 [exp] 805 / 0 AT1G55740 1154 / 0.0 raffinose synthase 1, seed imbibition 1 (.1) Potri.016G002300 [exp] 673 / 0 AT3G57520 758 / 0.0 raffinose synthase 2, seed imbibition 2 (.1.2.3) Potri.015G086400 [exp] 658 / 0 AT3G57520 827 / 0.0 raffinose synthase 2, seed imbibition 2 (.1.2.3) Potri.004G207900 [exp] 551 / 0 AT5G40390 1145 / 0.0 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Potri.T124908 [exp] 551 / 0 AT5G40390 1055 / 0.0 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Potri.007G123400 [exp] 541 / 0 AT5G40390 1147 / 0.0 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF05691 [flax] [poplar] Raffinose_syn Raffinose synthase or seed imbibition protein Sip1
Representative CDS sequence Show only first row Show all	>Lus10017516 pacid=23163120 polypeptide=Lus10017516 locus=Lus10017516.g ID=Lus10017516.BGIv1.0 annot-version=v1.0 ATGACGATCAAACCGGCCATTCGGATCGCCGACAACAAGCTTATCGTCAAGGACAGGACGATTCTCGTCGGAGTACCGGACAATGTTGTGGCGACGTCGA GCTCCGACTCCGGCCCGGCGGAGGGAGTCTTCCTCGGGGCAATGCTCGACAAAGAAGGAAGCCGTCACGTCGTTCCCTTGGGCACTCTTCGCAACATCCG GTTCATGTCCTGCTTCCGATTCAAACTATGGTGGATGGCTCAGAGAATGGGCGACCAAGGGAAAGATATCCCGCTGGAGACTCAGTTCTTGCTCCTCGAG AGCAAGAACGACGGATCTCATCACATTGAATCGGACGGCGGAGGAGATGACACATCTCTGTATACGGTTATGCTCCCTTTGATCGACGGCTCATTCCGAG CCTGTCTGCAGGGGAATGAAAACGACGAACTGGAGCTTTGTTTGGAGAGCGGCGATTCGGTTATCGAAGCGGCGTCGTTTACTCACGCGATGTTCGTTCA CGCCGGTACAGATCCGTTCGCGACTATTACGGAGGCTATGCGGGCCGTTAAGTCGCATCTGAAAACATTCCGTCTCCGTCACGAGAAGAAACCGCCCGGA ATTCTCGATTATTTCGGGTGGTGCACGTGGGACGCGTTCTACCAGGAGGTTACGCAAGAAGGCGTTGAGTCCGGCCTCCGTAGCCTGGCCGACGGCGGTA CGCCGCCGAAGTTCGTTATAATCGACGACGGATGGCAGTCCGTCGGTGGAGACTCGGAATCGCAGCAAGAACAGCCGTTGATGAGATTGACTGGAATCAA AGAGAATTCAAAATTTCAAAACAAGGAAGATCCATCGGCGGAGGGGATTACGAACATCGTGAACATCGCCAAACAGATGTACGGATTGAAATACGTGTAC GTGTGGCACGCAATCACCGGATACTGGGGCGGAGTCCGGCCAGGAGGAGATTACGAATCGGCGATGAAGTACCCGATGGTTTCGAAGGGAGTTGTGCAGA ACGAGCCCGGTTGGAAGACTGATGTGCTGGCTGTACAGGGATTAGGGCTTGTGAATCCGAAGAATGTCCATAAATTCTACGACGAGCTCCATAGCTATTT AGCAGACGCCGGAGTTGATGGCGTGAAGGTGGATGTACAGTGTATACTGGAAACTCTGGGAGCAGGATTGGGAGGAAGAGTGGAGCTGACGAAGCAGTTT CATCACGCACTCGACTCTTCCGTGGCCAGCAATTTCCCTGATAATGGAATTATTGCCTGTATGAGTCACAACACTGATGCATTATACTGCTCGAAGCAAA CGGCGGTGGTGAGGGCGTCGGACGATTTCTACCCACGGGATCCGGTGTCGCACACGATACACATAGCATCGGTGGCGTACAACAGCGTGTTCTTGGGGGA GATAATGCAGCCGGATTGGGATATGTTTCATTCTCTGCATCCAGCTGCTGATTATCATGCGTCTGCTCGTGCAATCAGCGGGGGCCCTATCTATGTAAGT GATGCTCCAGGGAAGCACAATTTCCAGCTGCTGAAGAAGCTGGTTCTCCCTGATGGGACTATCCTAAGAGCACTTTTGCCTGGTAGACCCACCCGCGACT GCTTGTTCTCCGATCCTGCTCGTGATGGTGTTAGTTTGTTGAAGATATGGAACATGAACAAGTACACTGGGGTGATTGGGGTGTACAATTGCCAAGGAGC AGCATGGAATGCCGCTGAAAGGAAGAACACATTCCATCAAACCGGAAATGATGCGCTTACAGGCGAAATCAGATGTCGAGATGTGCATCTGATTCGAGAA GCGTCCTTGGAGGACTCAAACTGGGACGGACGATGTGCTGTCTACTGTCACAACTCGAGGGAGCTTACTACGCTTCAGTACAATGCATCCCTTCCGGTGT CGCTTAAGGTGCTTGAGTTCAGTATCTACACAGTCACTCCGATCAAGGTGTCGGGCGAGGGAGTCGGATTTGCGCCATTGGGGCTGATCGATATGTTCAA TGGTGGTGGAGCAATCCAGGGGGTTAAGTATGAAGTGGGAGGAGGCAAAGTGTTGATGGAAGTTAAGGGTTGTGGGAAGGTTGGAGTGTACTCTTCGGTT AAACCGAAGGGGTGTGTTGTGGATTCGTGTCCGGTTGAGTTTGAGTATGATTATTGTTCGGGTTTGGTTAGTTTTGGAGTGGAGAATTTGCCTGAGGAGG GGAAGTTCCATGAGGTTGAGGTAGATATATAG
AA sequence Show only first row Show all	>Lus10017516 pacid=23163120 polypeptide=Lus10017516 locus=Lus10017516.g ID=Lus10017516.BGIv1.0 annot-version=v1.0 MTIKPAIRIADNKLIVKDRTILVGVPDNVVATSSSDSGPAEGVFLGAMLDKEGSRHVVPLGTLRNIRFMSCFRFKLWWMAQRMGDQGKDIPLETQFLLLE SKNDGSHHIESDGGGDDTSLYTVMLPLIDGSFRACLQGNENDELELCLESGDSVIEAASFTHAMFVHAGTDPFATITEAMRAVKSHLKTFRLRHEKKPPG ILDYFGWCTWDAFYQEVTQEGVESGLRSLADGGTPPKFVIIDDGWQSVGGDSESQQEQPLMRLTGIKENSKFQNKEDPSAEGITNIVNIAKQMYGLKYVY VWHAITGYWGGVRPGGDYESAMKYPMVSKGVVQNEPGWKTDVLAVQGLGLVNPKNVHKFYDELHSYLADAGVDGVKVDVQCILETLGAGLGGRVELTKQF HHALDSSVASNFPDNGIIACMSHNTDALYCSKQTAVVRASDDFYPRDPVSHTIHIASVAYNSVFLGEIMQPDWDMFHSLHPAADYHASARAISGGPIYVS DAPGKHNFQLLKKLVLPDGTILRALLPGRPTRDCLFSDPARDGVSLLKIWNMNKYTGVIGVYNCQGAAWNAAERKNTFHQTGNDALTGEIRCRDVHLIRE ASLEDSNWDGRCAVYCHNSRELTTLQYNASLPVSLKVLEFSIYTVTPIKVSGEGVGFAPLGLIDMFNGGGAIQGVKYEVGGGKVLMEVKGCGKVGVYSSV KPKGCVVDSCPVEFEYDYCSGLVSFGVENLPEEGKFHEVEVDI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20250		RS6, DIN10	raffinose synthase 6, DARK IND...		Lus10017516 [exp]	0	1
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Lus10006498 [exp]	1.4	0.9862
AT4G32480			Protein of unknown function (D...		Lus10011174 [exp]	1.4	0.9847
AT2G43400		ETFQO	electron-transfer flavoprotein...		Lus10027045 [exp]	3.5	0.9773
AT4G26260		MIOX4	myo-inositol oxygenase 4 (.1.2...		Lus10012923 [exp]	4.1	0.9710
AT1G11380			PLAC8 family protein (.1)		Lus10018410 [exp]	4.9	0.9811
AT5G49360		ATBXL1, BXL1	beta-xylosidase 1 (.1)		Lus10016858 [exp]	5.5	0.9801
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10028247 [exp]	6.0	0.9806
AT1G27150			Tetratricopeptide repeat (TPR)...		Lus10037232 [exp]	6.9	0.9750
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Lus10019087 [exp]	7.0	0.9753
AT1G77210		AtSTP14	sugar transport protein 14, su...		Lus10022421 [exp]	7.1	0.9667

Compare expression of checked genes

Lus10017516 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.