Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23500 640 / 0 Pectin lyase-like superfamily protein (.1) AT3G61490 637 / 0 Pectin lyase-like superfamily protein (.1.2.3) AT3G48950 598 / 0 Pectin lyase-like superfamily protein (.1) AT2G23900 571 / 0 Pectin lyase-like superfamily protein (.1) AT3G62110 415 / 7e-142 Pectin lyase-like superfamily protein (.1) AT4G23820 385 / 2e-130 Pectin lyase-like superfamily protein (.1) AT4G33440 370 / 5e-124 Pectin lyase-like superfamily protein (.1) AT5G41870 360 / 2e-120 Pectin lyase-like superfamily protein (.1) AT3G42950 344 / 6e-114 Pectin lyase-like superfamily protein (.1) AT3G16850 342 / 1e-113 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028766 [exp] 882 / 0 AT3G61490 670 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Lus10007922 [exp] 677 / 0 AT3G61490 743 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Lus10027516 [exp] 542 / 0 AT3G48950 629 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10039279 [exp] 539 / 0 AT3G48950 624 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038030 [exp] 419 / 2e-143 AT3G62110 632 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10014799 [exp] 385 / 1e-129 AT4G33440 630 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10003589 [exp] 384 / 2e-129 AT4G33440 649 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10023101 [exp] 367 / 6e-123 AT4G23820 642 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10032374 [exp] 366 / 1e-122 AT4G23820 656 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G100000 [exp] 731 / 0 AT4G23500 701 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G131700 [exp] 719 / 0 AT3G61490 688 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Potri.002G162400 [exp] 683 / 0 AT3G61490 734 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Potri.017G145900 [exp] 609 / 0 AT3G48950 659 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.004G073900 [exp] 572 / 0 AT3G48950 635 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G112100 [exp] 408 / 5e-139 AT3G62110 649 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G186900 [exp] 407 / 7e-139 AT3G62110 666 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.005G063400 [exp] 382 / 1e-128 AT4G33440 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G139100 [exp] 380 / 3e-128 AT4G23820 660 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G105800 [exp] 379 / 2e-127 AT4G33440 642 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10017517 pacid=23163182 polypeptide=Lus10017517 locus=Lus10017517.g ID=Lus10017517.BGIv1.0 annot-version=v1.0 ATGTTTCAGGTGATGGAAGTTACAGTTACAGCAGCAGTTTGTGCTGTCCTAGCTCTGGTAGTAATTGCAGAGAGTTCTTCGTCAGTCGAGGCCATGAAAA AGTCAATGGAACTGGATTACTTTGAGTTTACAGGGAAAGATTGCAGGGCAAATGTGGCATCCATCACAGATTTTGGAGGAATTGGAGATGGCAACACTTC AAATACAATGGCTTTCCAAGATGCAATGGATTCTCTGGCAAATTACTCTTCATCTGGAGGCTCTTTGCTTTATGTCCCTCCGGGGAGATGGCTCACCGGA AGTTTCAACATCACCGGAAGCCATTTCACTCTCTACCTTGACCAGGATGCTATTCTTCTTGCCTCTCTGGATGAAGATCAGTACCCTGTGATTGAACCCT TGCCATCCTATGGTAGAGGAAGGGATGCTGATGGTGGAAGGTATAGCAGTCTCATTTTCGGAACCAATCTCACTGATGTTGTGATTACAGGAGCTAATGG GACTATTGATGGTCAGGGAGAGTTATGGTGGAAGAAATATCGTGCCGGGGAGCTGAATTTTACGAGACCTTACTTGATAGAACTGATGTATTCTACTGAC ATTCAGATCTCCAATCTTACATTGATGAACTCTCCATCATGGAATGTTCATCCTGTTTACAGCAGCAATATTCTCGTTAAAGGTTTGACGATTCTGGCAC CCGTGACATCTGCTAATACTGATGGGATCAACCCAGATTCATGCACCAACACGAGGATCGAAGACTGTTTCATTGTATCTGGAGACGACTGTGTAGCAGT GAAGAGCGGGTGGGACGAGTATGGTACAGCATTCGGGATGCCAACCAAGCATCTTGTCATCAAAAGGCTCACTTGCATTTCCCCCTTCAGCGCCGCGATT GCGTTGGGAAGTGAAATGTCAGGTGGGATTCAGGACGTCAGGGCAGAAGACATCACTGCTATAAATACCGAATCCGGTGTCAGGATCAAGACTGCTGTGG GGAGAGGCGGCTACGTGAAGGACATATACGTGAGAAGAATGACGATGAAGACTATGAAATGGGTGTTTTGGATGACGGGGAACTACGGGTCTCACCCTGA CAACAACTACGATCCTAACGCGATCCCTGTTGTTCAGAACATAAATTACCGCGACATGGTCGCTGAGAATGTGACCATGGCAGCTAGATTGGAAGGAATC GGAGGGGATCCCTTCACCGGAATCTGCATATCTAATGTAACTATTGGACTTGCGGAGAAACCGAAGAAGCTGCAATGGAACTGCACGGATGTTGCAGGGA TAACGAGTGGTGTAACTCCGAAACCTTGTGATTTACTACCGGACCAAGGCCAAGAGAAGAAGGCATCCTGCAATTTTCCAGAAGATACCTTGGCAATTGA GGATATCCAAGTTCATTCCTGCTCCTACAGTAAGAGATACTTCTGA
AA sequence Show only first row Show all	>Lus10017517 pacid=23163182 polypeptide=Lus10017517 locus=Lus10017517.g ID=Lus10017517.BGIv1.0 annot-version=v1.0 MFQVMEVTVTAAVCAVLALVVIAESSSSVEAMKKSMELDYFEFTGKDCRANVASITDFGGIGDGNTSNTMAFQDAMDSLANYSSSGGSLLYVPPGRWLTG SFNITGSHFTLYLDQDAILLASLDEDQYPVIEPLPSYGRGRDADGGRYSSLIFGTNLTDVVITGANGTIDGQGELWWKKYRAGELNFTRPYLIELMYSTD IQISNLTLMNSPSWNVHPVYSSNILVKGLTILAPVTSANTDGINPDSCTNTRIEDCFIVSGDDCVAVKSGWDEYGTAFGMPTKHLVIKRLTCISPFSAAI ALGSEMSGGIQDVRAEDITAINTESGVRIKTAVGRGGYVKDIYVRRMTMKTMKWVFWMTGNYGSHPDNNYDPNAIPVVQNINYRDMVAENVTMAARLEGI GGDPFTGICISNVTIGLAEKPKKLQWNCTDVAGITSGVTPKPCDLLPDQGQEKKASCNFPEDTLAIEDIQVHSCSYSKRYF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23500			Pectin lyase-like superfamily ...		Lus10017517 [exp]	0	1
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10018006 [exp]	1.4	0.8663
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10033981 [exp]	2.4	0.8564
AT5G59350			unknown protein		Lus10005456 [exp]	3.5	0.8406
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10018007 [exp]	5.0	0.8434
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10025142 [exp]	5.5	0.8299
AT3G12150			unknown protein		Lus10027799 [exp]	5.5	0.7926
AT1G76240			Arabidopsis protein of unknown...		Lus10012275 [exp]	6.0	0.8460
AT1G51680		AT4CL1, 4CL.1, ...	ARABIDOPSIS THALIANA 4-COUMARA...		Lus10005390 [exp]	9.6	0.8562
AT3G23090			TPX2 (targeting protein for Xk...		Lus10021223 [exp]	11.2	0.8317
AT3G19895			RING/U-box superfamily protein...		Lus10029068 [exp]	13.4	0.8077

Compare expression of checked genes

Lus10017517 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.