Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63930 203 / 3e-64 ROH1 from the Czech 'roh' meaning 'corner' (.1) AT4G11300 162 / 8e-49 Protein of unknown function (DUF793) (.1) AT1G18740 144 / 1e-41 Protein of unknown function (DUF793) (.1) AT1G74450 144 / 2e-41 Protein of unknown function (DUF793) (.1) AT4G23530 135 / 4e-38 Protein of unknown function (DUF793) (.1) AT1G43630 134 / 8e-38 Protein of unknown function (DUF793) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028764 [exp] 333 / 2e-115 AT1G63930 477 / 3e-168 from the Czech 'roh' meaning 'corner' (.1) Lus10029782 [exp] 160 / 8e-48 AT1G18740 477 / 1e-168 Protein of unknown function (DUF793) (.1) Lus10042809 [exp] 155 / 1e-45 AT1G74450 470 / 7e-166 Protein of unknown function (DUF793) (.1) Lus10028578 [exp] 153 / 5e-45 AT1G18740 488 / 4e-173 Protein of unknown function (DUF793) (.1) Lus10018883 [exp] 152 / 1e-44 AT1G18740 479 / 1e-169 Protein of unknown function (DUF793) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G099700 [exp] 248 / 4e-82 AT1G63930 418 / 5e-145 from the Czech 'roh' meaning 'corner' (.1) Potri.003G132100 [exp] 247 / 2e-81 AT1G63930 409 / 2e-141 from the Czech 'roh' meaning 'corner' (.1) Potri.005G192600 [exp] 166 / 2e-50 AT1G18740 461 / 9e-163 Protein of unknown function (DUF793) (.1) Potri.002G067800 [exp] 160 / 5e-48 AT1G18740 463 / 1e-163 Protein of unknown function (DUF793) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF05633 [flax] [poplar] BPS1 Protein BYPASS1-related
Representative CDS sequence Show only first row Show all	>Lus10017519 pacid=23163127 polypeptide=Lus10017519 locus=Lus10017519.g ID=Lus10017519.BGIv1.0 annot-version=v1.0 ATGGTGATCGGGAAGAACTGGTCCGCCGCGAAGCAGATCCAGGCGATGTGCTCCAATCTGTACGCGCCACGTGGCGCGGAATTGACGGGGATGGCGTTAC CTGTTTACATCATGAACGTCGTGATGGCATTCGTGATGTGGGCCCTGATCGCGGCAATCCCTTGCCAGGAGCGGGTCGGGTTGCCGCTGCATATCCAGAT ACCGAGGCAGTTTCCGTGGGCCCAGAGCATTATCGGGCTGCAGGAGAAGATTGGGGAAGAGTGGAAGAAGAAGGAGAAGAAAGGTTCCGCAGGTTTGCTG GACGAGATGCAGAGGATGGAGAAATTGAGCCAGGGGCTGATTGAGTTCTGCGACGGATTTCAGTTTCCGGTGGAGGAGGAAGGGAAATTGGAGGAAGTGG CGACGCAGGTGAGGGAGCTGGCGGCAGTTTGCGAGAAGATGGAGGAAGGATTGGTGTCGTTGCAGCAACAGATTAGGGATGTGTTCCATAGCATGGTGAG GAGTCGGACGGAAGTTCTGGAGTTGTTGGAGCATGCTGGAAGCAGTGTCAACCCATGA
AA sequence Show only first row Show all	>Lus10017519 pacid=23163127 polypeptide=Lus10017519 locus=Lus10017519.g ID=Lus10017519.BGIv1.0 annot-version=v1.0 MVIGKNWSAAKQIQAMCSNLYAPRGAELTGMALPVYIMNVVMAFVMWALIAAIPCQERVGLPLHIQIPRQFPWAQSIIGLQEKIGEEWKKKEKKGSAGLL DEMQRMEKLSQGLIEFCDGFQFPVEEEGKLEEVATQVRELAAVCEKMEEGLVSLQQQIRDVFHSMVRSRTEVLELLEHAGSSVNP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63930		ROH1	from the Czech 'roh' meaning '...		Lus10017519 [exp]	0	1
AT3G52155			Phosphoglycerate mutase family...		Lus10040405 [exp]	13.2	0.7002
AT1G80310		MOT2	molybdate transporter 2, sulfa...		Lus10038286 [exp]	13.3	0.7561
AT5G42130		AtMfl1	MitoFerrinLike1, Mitochondrial...		Lus10042796 [exp]	22.8	0.6656
AT1G05590		HEXO2, ATHEX3	BETA-HEXOSAMINIDASE 3, beta-he...		Lus10030348 [exp]	26.3	0.6312
AT5G60800			Heavy metal transport/detoxifi...		Lus10016133 [exp]	35.8	0.6681
AT5G42130		AtMfl1	MitoFerrinLike1, Mitochondrial...		Lus10042797 [exp]	42.5	0.6613
AT4G39840			unknown protein		Lus10024058 [exp]	55.2	0.6620
AT5G01090			Concanavalin A-like lectin fam...		Lus10027751 [exp]	64.0	0.6234
AT5G03510	C2H2ZnF		C2H2-type zinc finger family p...		Lus10023912 [exp]	77.0	0.6403
AT4G24805			S-adenosyl-L-methionine-depend...		Lus10013662 [exp]	88.2	0.6341

Compare expression of checked genes

Lus10017519 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.