Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11280 644 / 0 ATACS6, ACS6 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) AT3G61510 624 / 0 AT-ACS1, ACS1 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) AT1G01480 613 / 0 AT-ACC2, ACS2 1-amino-cyclopropane-1-carboxylate synthase 2 (.1.2) AT4G37770 526 / 0 ACS8 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) AT4G08040 513 / 2e-180 ACS11 1-aminocyclopropane-1-carboxylate synthase 11 (.1) AT5G65800 513 / 4e-180 CIN5, ETO2, ACS5, ATACS5 ETHYLENE OVERPRODUCER 2, CYTOKININ-INSENSITIVE 5, ACC synthase 5 (.1) AT3G49700 513 / 8e-180 AtACS9, ACS9, ETO3 ETHYLENE OVERPRODUCING 3, 1-aminocyclopropane-1-carboxylate synthase 9 (.1) AT2G22810 507 / 2e-177 ACC4, ACS4, ATACS4 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID SYNTHASE POLYPEPTIDE, 1-aminocyclopropane-1-carboxylate synthase 4 (.1) AT4G26200 504 / 9e-177 ACS7, ATACS7 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) AT5G51690 375 / 2e-125 ACS12 1-amino-cyclopropane-1-carboxylate synthase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028760 [exp] 844 / 0 AT4G11280 570 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Lus10024673 [exp] 772 / 0 AT1G01480 610 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 2 (.1.2) Lus10032301 [exp] 768 / 0 AT1G01480 609 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 2 (.1.2) Lus10007910 [exp] 645 / 0 AT3G61510 659 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) Lus10036396 [exp] 636 / 0 AT3G61510 660 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) Lus10011565 [exp] 520 / 0 AT4G37770 740 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10032695 [exp] 504 / 6e-177 AT4G26200 659 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Lus10008579 [exp] 502 / 4e-176 AT4G26200 664 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Lus10007223 [exp] 498 / 9e-174 AT4G37770 747 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G132300 [exp] 750 / 0 AT4G11280 659 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Potri.001G099400 [exp] 739 / 0 AT4G11280 656 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Potri.002G163700 [exp] 649 / 0 AT3G61510 684 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) Potri.007G007800 [exp] 526 / 0 AT4G37770 749 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.018G067000 [exp] 519 / 0 AT4G26200 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.002G113900 [exp] 518 / 0 AT4G37770 682 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.006G149600 [exp] 517 / 0 AT4G26200 651 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.014G012600 [exp] 516 / 0 AT4G37770 755 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.015G132100 [exp] 395 / 7e-133 AT5G51690 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) Potri.003G117700 [exp] 379 / 3e-126 AT1G62960 664 / 0.0 ACC synthase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10017521 pacid=23163123 polypeptide=Lus10017521 locus=Lus10017521.g ID=Lus10017521.BGIv1.0 annot-version=v1.0 ATGGTGTTCATGCTGAACAATCAGATGCTTTCAAGGATAGCCACCGGCGACGGCCACGGCGAGATATCCTCCTACTTCGACGGCTGGAAGGCCTACGACA GCGATCCTTACCACCACGTCACCAACCCCAACGGCATGATCCAGATGGGTCTTGCTGAAAACCAGCTCTGCTTTGATATGGTCGAACAATGGATGAACAA CAACCCATCTGCCTCAATCTGCACCTCCCAGGGAGCCAGAGGGTTCAAAGACATTGCCATCTTTCAGGACTACCATGGCTTGCCAGAGTTTCGCAATGCT GTGGCGAAGTTCATGGGGAAAGTTAGAGGAGATAGAGTGAAGTTCAACCCTGACAGGATCGTCATGGCCGGAGGAGCCACCGGCGCTCATGAGACCGTCG CTTTCTGCTTGGCCGATCCCGGCGATGCTTTCCTCATCCCCACTCCTTATTACCCTGGATTCGACCGGGATTTGAGATGGAGGACGGGAGTGCAGCTGGT GCCAATAGAATGCCAGAGCTCCAACAACTTCAAGCTGAGGATTGAAGATTTGGAATCTGCTTACGAAATGGCTAAACTCAACAACGTTAGGGTCAAAGGA TTGCTCTTGACCAACCCATCCAACCCGCTGGGTACAATTCTCGACGGGAACACTCTGAGAAGCATCGTCTCCTTCACCAACGACAACAACATTCACCTCA TCTGCGATGAGATCTACTCCGCCACCGTGTTCGGCAAACCTGATTACGTCAGCGTCGCCGAGATCGTCGACGAATACCAGAACAACACTACCGAAGATGA CGATGATGATGGTAATAGTAACGGGCTCAGGCCTACACTGAATCTGGACCTGATCCATATTGTTTACAGCCTCTCAAAGGACATGGGATTTCCGGGCTTC CGGGTCGGGATAATTTATTCATACAACGACGTCGTAGTCAGCTGCGCAAGGAAGATGTCGAGTTTCGGTTTGGTTTCGACCCAGACTCAGCACCTGATCG GTTCGATGCTCTCGGACGATGAATTCGTCGACGAATTCATCGCCGCGAACAGGGGGAGGCTGGCGGAGAGGCACAGGGCGTTTACGGGAGGGTTGGCGGA AGTCGGAATTCGTTGCCTGAAGACGAGCAACGCCGGGCTGTTTGTGTGGATGGATCTGAGGCGGCTGTTAAAGGAGCAGAGCGTGGAGGCGGAGACGGCG TTGTGGCGCGTGATAATCAACGAGGTGAAGCTCAATGTCTCGCCGGGGAGCTCGTTCCACTGCTCGGAGCCGGGGTGGTTCCGGGTGTGCTTTGCGAACA TGGACGACGAGACGATGGAGGTGGCGCTGTCGAGGATTAGGGCTTTTGTGGCGGAGAACAAGGACGCGATGAAGCCGGTGAAGAAGCTATGCGCTCAGAG CAGCTTGAAATTGAGCTTCTCCAACAGGATCTACGACGAGTTTGTTATGTCCCCGAGGTCGCCGATTGCGAGGTCGCCGCTCGTCCGGGCCAGAACTTGA
AA sequence Show only first row Show all	>Lus10017521 pacid=23163123 polypeptide=Lus10017521 locus=Lus10017521.g ID=Lus10017521.BGIv1.0 annot-version=v1.0 MVFMLNNQMLSRIATGDGHGEISSYFDGWKAYDSDPYHHVTNPNGMIQMGLAENQLCFDMVEQWMNNNPSASICTSQGARGFKDIAIFQDYHGLPEFRNA VAKFMGKVRGDRVKFNPDRIVMAGGATGAHETVAFCLADPGDAFLIPTPYYPGFDRDLRWRTGVQLVPIECQSSNNFKLRIEDLESAYEMAKLNNVRVKG LLLTNPSNPLGTILDGNTLRSIVSFTNDNNIHLICDEIYSATVFGKPDYVSVAEIVDEYQNNTTEDDDDDGNSNGLRPTLNLDLIHIVYSLSKDMGFPGF RVGIIYSYNDVVVSCARKMSSFGLVSTQTQHLIGSMLSDDEFVDEFIAANRGRLAERHRAFTGGLAEVGIRCLKTSNAGLFVWMDLRRLLKEQSVEAETA LWRVIINEVKLNVSPGSSFHCSEPGWFRVCFANMDDETMEVALSRIRAFVAENKDAMKPVKKLCAQSSLKLSFSNRIYDEFVMSPRSPIARSPLVRART

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11280		ATACS6, ACS6	1-aminocyclopropane-1-carboxyl...		Lus10017521 [exp]	0	1
AT4G25560	MYB	LAF1, ATMYB18	LONG AFTER FAR-RED LIGHT 1, my...		Lus10027458 [exp]	10.3	0.8144
AT1G64060		RBOHAP108, ATRB...	ARABIDOPSIS THALIANA RESPIRATO...		Lus10017527 [exp]	16.1	0.7993
AT4G00770			unknown protein		Lus10009318 [exp]	27.9	0.7098
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10006611 [exp]	41.1	0.7876
AT3G62270			HCO3- transporter family (.1)		Lus10009995 [exp]	42.8	0.7845
					Lus10016767 [exp]	48.7	0.7601
AT5G67200			Leucine-rich repeat protein ki...		Lus10018254 [exp]	49.1	0.7160
AT1G09740			Adenine nucleotide alpha hydro...		Lus10009272 [exp]	54.7	0.7499
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10039363 [exp]	54.8	0.7688
AT3G56970	bHLH	ORG2, bHLH038	OBP3-RESPONSIVE GENE 3, basic ...		Lus10039006 [exp]	57.1	0.7685

Compare expression of checked genes

Lus10017521 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.