Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63970 310 / 1e-107 MECPS, ISPF 2C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, isoprenoid F (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028759 [exp] 431 / 7e-152 AT1G63970 290 / 2e-96 2C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, isoprenoid F (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G132400 [exp] 339 / 3e-119 AT1G63970 326 / 4e-114 2C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, isoprenoid F (.1.2) Potri.001G099300 [exp] 339 / 3e-119 AT1G63970 321 / 4e-112 2C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, isoprenoid F (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02542 [flax] [poplar] YgbB YgbB family
Representative CDS sequence Show only first row Show all	>Lus10017522 pacid=23163175 polypeptide=Lus10017522 locus=Lus10017522.g ID=Lus10017522.BGIv1.0 annot-version=v1.0 ATGGCGGCCACCAATTTCTGTGCCACTTACTCTTCTTCGATCTCCACCACCACCAACAACAAACAAACGGCACCTCTTCCTGCGTTTCAACCTCGCAATT GCTCGCCTTCCCTGCCGCACCATCTTCTCTCCGCCAGGCGGAAGCCGGCGACACTCTCCGTGACGGCGGCGGCTGCCCCTTCTGCTGTCCAACAGGTCGA CGGAGCCACAAGCTCCGGTAAAGCTTCCAAGGCTCTGCCTTTGAGAGTCGGGCATGGGTTTGACCTTCATCGGTTGGAGCCTGGCTACCCTTTGATAATT GGTGGGATTAACATCCCTCACGACCGAGGCTGCGAGGCTCACTCCGACGGAGATGTGTTGCTTCACTGCGTAGTGGATGCGATATTGGGGGCACTGAGTC TGCCTGATATTGGACAGATATTCCCTGATAACGATCCCAAGTGGAAGGGTGCTGCTTCTTCTGTTTTCATCAAAGAAGCTGTGAGACTGATGCATGAAGC TGGCTACGAGATCGGAAACCTAGACGCCACGTTGATTCTTCAAAGGCCGAAACTGAGCCCCTTCAAGGAAGAGATCAGGGCCAATTTGTGTGAGCTGCTT GGAGCAGATCCAGCTGTTGTGAACTTAAAGGCAAAAACTCACGAGAAGGTGGATAGTCTGGGCGAGAACAGAAGTATTGCAGCTCATACCGTCGTTCTTC TAATGAAGAAATGA
AA sequence Show only first row Show all	>Lus10017522 pacid=23163175 polypeptide=Lus10017522 locus=Lus10017522.g ID=Lus10017522.BGIv1.0 annot-version=v1.0 MAATNFCATYSSSISTTTNNKQTAPLPAFQPRNCSPSLPHHLLSARRKPATLSVTAAAAPSAVQQVDGATSSGKASKALPLRVGHGFDLHRLEPGYPLII GGINIPHDRGCEAHSDGDVLLHCVVDAILGALSLPDIGQIFPDNDPKWKGAASSVFIKEAVRLMHEAGYEIGNLDATLILQRPKLSPFKEEIRANLCELL GADPAVVNLKAKTHEKVDSLGENRSIAAHTVVLLMKK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Lus10017522 [exp]	0	1
AT2G15760			Protein of unknown function (D...		Lus10014025 [exp]	2.0	0.9795
AT5G59100			Subtilisin-like serine endopep...		Lus10004686 [exp]	4.9	0.9796
					Lus10000858 [exp]	5.7	0.9800
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10034092 [exp]	8.5	0.9805
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10030589 [exp]	8.7	0.9795
AT5G63450		CYP94B1	"cytochrome P450, family 94, s...		Lus10033853 [exp]	9.2	0.9687
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10014191 [exp]	9.4	0.9739
AT5G62790		PDE129, DXR	PIGMENT-DEFECTIVE EMBRYO 129, ...		Lus10042118 [exp]	10.6	0.9782
AT5G56960	bHLH	bHLH041	basic helix-loop-helix (bHLH) ...		Lus10017152 [exp]	10.7	0.9746
AT5G36970		NHL25	NDR1/HIN1-like 25 (.1)		Lus10020783 [exp]	11.2	0.9776

Compare expression of checked genes

Lus10017522 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.