Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63980 343 / 8e-116 D111/G-patch domain-containing protein (.1.2) AT3G52350 44 / 6e-05 D111/G-patch domain-containing protein (.1) AT1G30480 43 / 0.0003 DRT111 DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111, D111/G-patch domain-containing protein (.1) AT5G08535 40 / 0.0006 D111/G-patch domain-containing protein (.1.2) AT3G54230 42 / 0.001 SUA suppressor of abi3-5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024674 [exp] 466 / 6e-164 AT1G63980 352 / 3e-119 D111/G-patch domain-containing protein (.1.2) Lus10032300 [exp] 325 / 1e-109 AT1G63980 227 / 2e-71 D111/G-patch domain-containing protein (.1.2) Lus10037485 [exp] 45 / 8e-05 AT3G52120 457 / 3e-158 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2) Lus10015703 [exp] 45 / 9e-05 AT3G52120 477 / 2e-166 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2) Lus10023355 [exp] 44 / 0.0001 AT1G30480 470 / 3e-166 DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111, D111/G-patch domain-containing protein (.1) Lus10038451 [exp] 44 / 0.0001 AT1G30480 455 / 6e-160 DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111, D111/G-patch domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G132600 [exp] 406 / 3e-140 AT1G63980 328 / 9e-110 D111/G-patch domain-containing protein (.1.2) Potri.009G064600 [exp] 45 / 5e-05 AT3G52120 509 / 1e-179 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2) Potri.001G372600 [exp] 44 / 0.0001 AT1G30480 327 / 5e-110 DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111, D111/G-patch domain-containing protein (.1) Potri.011G098100 [exp] 44 / 0.0001 AT1G30480 348 / 1e-118 DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111, D111/G-patch domain-containing protein (.1) Potri.001G269900 [exp] 43 / 0.0003 AT3G52120 500 / 3e-176 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0449 [flax] [poplar] G-PATCH PF01585 [flax] [poplar] G-patch G-patch domain
Representative CDS sequence Show only first row Show all	>Lus10017524 pacid=23163124 polypeptide=Lus10017524 locus=Lus10017524.g ID=Lus10017524.BGIv1.0 annot-version=v1.0 ATGGGAACACCTGAAGCTCCTCTCTGCTACGTCGGCGTAGCTAGGAAGTCCGCCGCTTTCCGACTCATGAAGCAAATGGGATGGGAAGAAGGGGAAGGGC TCGGGAAAGATAAGCAGGGGATCAAGGGACACGTCAGAGTCAAGAACAAGCAGGATACTGCTGGTGTTGGAGTTGAGAAGCCTAATGTTTGGGCGTTTGA TACTACCCAATTTGATAATATCTTGAAGAGATTAAAAGTGCAAGCTGTACAGAACAGTGATGAAGCTACACCGAACAATAGTGAAGAAGATAAAGCAGAT GATAAATCTCTGTCTAGAGATGTTCAAGAACCGGTTGCTAAGGCTACTAGGCCACAAGGAAGATACAAGAAAAGAGAGAGAGGAAAACTCGTCACTGCCT ATGCTTCCAACGATTTGGAAGGGATTCTTGTTAGAAAGTCTGAGGACTCGCCAGAAACAAATCTGGATGACCTGGACTCTGCAAAAGAACCAGAAATCCT CATATATAATCCTTCAGAAAACAAGGTTGAAGAGCTTCCTTCAGACTGGTGGGGCTACAAGAATGGATTTGTGGCTGGCGGTCTTCTGGGAGCTCGTTCT ACCAAGAAGAAATCAGCAAAAAATGGAGATGCTCAAAATTCTAAAGATAGAACTACATTCTTTGAACAAGACCAAGAAGATCTCTACAATCTTGTTCAAG ATAAAGCCACATCTGGGAAACAAGGACTTGGGATTAAGGACCGTGTAAAGAAAATAGCAGGTGTCCGGTTTGAGGGGAAAAGGAAATCCTTTTCTGACAG TGAGGAGGACAATGATTCTGGTGGTGATGATGATGATGACTCTGCTGACTATGATTCTGCAACAGAGGAAGAAGCTAATGATGCTGGGAAAATGAAAATT GTTGATAATGAGGATGGTGCTGATGTTGATTCCTCGAGGAAAAGAAGATATGATGACTCGACATCATGTGAAGTCCAGAAGGTTAATCTGAAGAAGCTCT GTAAACGCCTTCTACAACAGGCACCTGGAGAATCACTGAAGCTAAATAAGTTGAAGGTTCTTATTGACGAGAACTCATCCTCTGTTTTCTCAAATTACTC TTCAAAAAGAGATGCCCTTGATTACTTAAAGAACAAACTAGAAGGCAGTGGGAAATTTACGCTGGAGGGGAAAAGAGTAAGTCTAGCCACCACCAGAAAA GGCTGA
AA sequence Show only first row Show all	>Lus10017524 pacid=23163124 polypeptide=Lus10017524 locus=Lus10017524.g ID=Lus10017524.BGIv1.0 annot-version=v1.0 MGTPEAPLCYVGVARKSAAFRLMKQMGWEEGEGLGKDKQGIKGHVRVKNKQDTAGVGVEKPNVWAFDTTQFDNILKRLKVQAVQNSDEATPNNSEEDKAD DKSLSRDVQEPVAKATRPQGRYKKRERGKLVTAYASNDLEGILVRKSEDSPETNLDDLDSAKEPEILIYNPSENKVEELPSDWWGYKNGFVAGGLLGARS TKKKSAKNGDAQNSKDRTTFFEQDQEDLYNLVQDKATSGKQGLGIKDRVKKIAGVRFEGKRKSFSDSEEDNDSGGDDDDDSADYDSATEEEANDAGKMKI VDNEDGADVDSSRKRRYDDSTSCEVQKVNLKKLCKRLLQQAPGESLKLNKLKVLIDENSSSVFSNYSSKRDALDYLKNKLEGSGKFTLEGKRVSLATTRK G

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63980			D111/G-patch domain-containing...		Lus10017524 [exp]	0	1
AT1G69840			SPFH/Band 7/PHB domain-contain...		Lus10037213 [exp]	7.7	0.7647
AT1G71140			MATE efflux family protein (.1...		Lus10000619 [exp]	8.0	0.7088
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10022365 [exp]	9.2	0.7036
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10028639 [exp]	13.0	0.7588
AT4G13450			Adenine nucleotide alpha hydro...		Lus10014459 [exp]	19.4	0.7266
					Lus10005948 [exp]	22.6	0.6877
AT3G51820		PDE325, ATG4, G...	PIGMENT DEFECTIVE 325, UbiA pr...		Lus10002850 [exp]	34.9	0.6323
AT2G23810		TET8	tetraspanin8 (.1)		Lus10008891 [exp]	36.4	0.7068
AT5G20540		ATBRXL4, BRX-LI...	BREVIS RADIX-like 4 (.1)		Lus10021565 [exp]	36.9	0.6832
AT3G23910			unknown protein		Lus10022568 [exp]	38.7	0.6707

Compare expression of checked genes

Lus10017524 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.