Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09740 641 / 0 ATGH9B14 glycosyl hydrolase 9B14 (.1) AT4G23560 638 / 0 ATGH9B15 glycosyl hydrolase 9B15 (.1) AT1G02800 491 / 7e-171 ATCEL2 cellulase 2 (.1) AT4G02290 488 / 2e-169 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT1G70710 465 / 1e-160 CEL1 ,AtGH9B1 CELLULASE 1, glycosyl hydrolase 9B1 (.1) AT1G23210 462 / 8e-160 ATGH9B6 glycosyl hydrolase 9B6 (.1) AT1G71380 453 / 3e-156 ATCEL3 ,ATGH9B3 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) AT4G39010 451 / 4e-155 ATGH9B18 glycosyl hydrolase 9B18 (.1) AT1G22880 447 / 1e-153 ATCEL5 ,ATGH9B4 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4, ARABIDOPSIS THALIANA CELLULASE 5, cellulase 5 (.1.2) AT3G43860 441 / 2e-151 ATGH9A4 glycosyl hydrolase 9A4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008208 [exp] 485 / 4e-168 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10038223 [exp] 463 / 1e-159 AT4G02290 706 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10029071 [exp] 460 / 1e-158 AT1G70710 827 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10001666 [exp] 457 / 1e-157 AT1G02800 600 / 0.0 cellulase 2 (.1) Lus10009794 [exp] 450 / 8e-155 AT3G43860 684 / 0.0 glycosyl hydrolase 9A4 (.1) Lus10018077 [exp] 450 / 2e-154 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10038075 [exp] 448 / 3e-154 AT3G43860 686 / 0.0 glycosyl hydrolase 9A4 (.1) Lus10027205 [exp] 446 / 3e-153 AT1G70710 584 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10042071 [exp] 443 / 7e-152 AT4G39010 717 / 0.0 glycosyl hydrolase 9B18 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G098800 [exp] 701 / 0 AT4G09740 669 / 0.0 glycosyl hydrolase 9B14 (.1) Potri.001G083200 [exp] 492 / 3e-171 AT1G02800 593 / 0.0 cellulase 2 (.1) Potri.002G202400 [exp] 492 / 7e-171 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.014G126900 [exp] 484 / 4e-168 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.010G109200 [exp] 468 / 1e-161 AT1G70710 829 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.019G069300 [exp] 466 / 5e-161 AT1G71380 762 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) Potri.008G132700 [exp] 464 / 2e-160 AT1G70710 808 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.006G219700 [exp] 460 / 1e-158 AT3G43860 689 / 0.0 glycosyl hydrolase 9A4 (.1) Potri.004G162200 [exp] 454 / 2e-156 AT4G39010 703 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.009G123900 [exp] 448 / 7e-154 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00759 [flax] [poplar] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Lus10017525 pacid=23163179 polypeptide=Lus10017525 locus=Lus10017525.g ID=Lus10017525.BGIv1.0 annot-version=v1.0 ATGGGACGTAGGTTAGTATGGGGGCTGTTAATTTCTCTGTTTTGCTTTGCAATTTCGTTGCTGTTGGCTCCCAATGACCTTCGTCAAACCTCTCTCGTCT TCGCCATCAAAGACCACGAACGACTCAGTATCGCAACCTCCCCCTTCTATGGAGACGCCCTTGACAAGGCCATCTTGTTCTTCGAAGGCCAGAGGTCCGG CAAGCTCCCGGCCACCCGACGTGTCAGATGGCGTGGGGATTCTGCCCTCAACGACGGCCAGTCTGACCATGTGAATTTGGCGGGAGGGTATTATGATGCA GGGGACAATGTGAAATTCGGGTGGCCAATGTCATACACGGCGACGCTGTTGAGTTGGGCTGCCGTCGAGTACTGCCAAGAAATAACATCCGCCGGGAAAA TGGACAGCCTCCGCCAATCCATCCGCTGGGCCACCGATTTCCTCCTTCAATCCCACACTTCCGCCACCACCTTCTACACTCAGGTCGGTGATGGGAATGC GGATCACAGTTGCTGGGAAAGGCCAGAGGACATGGACACACCTCGCACTCTGTACAAGATCACTAGGGATGATCCTGGCTCCGAAGCTGCGGCCGAGGCT GCTGCTGCACTCTCCGCTGCTTCTATTGTCTTCAAGTCTGTTGATCCTGCTTATTCCTCCACGCTCCTTCAACATTCCAGATCACTCTTCCAGTTTGCGG ACACGTATAGGGCTTCTTACCGTGCTTCCTGCCCTTTCTACTGCTCTTACTCTGGCTACCAGGATGAGTTGTTGTGGGGTGCAAGCTGGCTGTACGAGGC GACTGGGGAATCGAGTTACCTCAGCTATGTCACTAAAAACCAAGGCTGGAGTGGCTGTGTTTCCGAGTTCAGTTGGGATAACAAACTTGCTGGAGTTCAG ACTTTGTTAGCTAAGAGATTCCATGCTGGGAATAAGGATTTGGAGAAGTACAAGAGTGATGCAGAATCATTCTTTTGTGCGTTGCTGCCTGGGAGTAGCT CTCAACAAATCAGAACTACACCTGGAGGGTTGATGTACGTTAGAGACGGTTCAAATTTACAGTATGTAACGAGCTCCAGTATGCTGCTTTTTATTTACTC CAATACACTGACGGCGTCTCGTGTCAACGGACTCCAATGCGGCTCTAACCATTTCTCTGCTTCCCAAATCAAAGCATTTGCCAAAACTCAGGTGGACTAT ATACTTGGGAGCAATCCGATGAAGATGTCGTACATGGTTGGGTTCGGAAACAAGTTCCCAGAACAACTTCACCACAGAGGATCATCTCTTCCTTCCATTA GATCTCATCGCTCCAACATTGGTTGCAACGACGGATTCTCCTACTACAACTCCAACCAACCAAACCCTAATATCCACGTTGGTGCTGTGGTCGGGGGCCC TGATTTGTCTGACCATTATCCGGATGCTCGAGCCGACTATTCTCATGCTGAACCCACTACTTACATCAATGCAGGGTTTGTGGGTTCCGTCGCTGCTTTG CTGGCTGTTTAA
AA sequence Show only first row Show all	>Lus10017525 pacid=23163179 polypeptide=Lus10017525 locus=Lus10017525.g ID=Lus10017525.BGIv1.0 annot-version=v1.0 MGRRLVWGLLISLFCFAISLLLAPNDLRQTSLVFAIKDHERLSIATSPFYGDALDKAILFFEGQRSGKLPATRRVRWRGDSALNDGQSDHVNLAGGYYDA GDNVKFGWPMSYTATLLSWAAVEYCQEITSAGKMDSLRQSIRWATDFLLQSHTSATTFYTQVGDGNADHSCWERPEDMDTPRTLYKITRDDPGSEAAAEA AAALSAASIVFKSVDPAYSSTLLQHSRSLFQFADTYRASYRASCPFYCSYSGYQDELLWGASWLYEATGESSYLSYVTKNQGWSGCVSEFSWDNKLAGVQ TLLAKRFHAGNKDLEKYKSDAESFFCALLPGSSSQQIRTTPGGLMYVRDGSNLQYVTSSSMLLFIYSNTLTASRVNGLQCGSNHFSASQIKAFAKTQVDY ILGSNPMKMSYMVGFGNKFPEQLHHRGSSLPSIRSHRSNIGCNDGFSYYNSNQPNPNIHVGAVVGGPDLSDHYPDARADYSHAEPTTYINAGFVGSVAAL LAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09740		ATGH9B14	glycosyl hydrolase 9B14 (.1)		Lus10017525 [exp]	0	1
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10023171 [exp]	3.2	0.8173
AT4G22390			F-box associated ubiquitinatio...		Lus10030826 [exp]	5.0	0.7826
AT5G65600			Concanavalin A-like lectin pro...		Lus10027340 [exp]	8.7	0.7471
AT4G18380			F-box family protein (.1.2)		Lus10013431 [exp]	12.5	0.8129
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10033548 [exp]	13.7	0.7731
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10026130 [exp]	13.9	0.7937
AT1G62340		ALE1	ABNORMAL LEAF-SHAPE 1, ABNORMA...		Lus10015559 [exp]	17.4	0.7642
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10036623 [exp]	19.8	0.7839
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10011578 [exp]	20.4	0.7424
AT3G16720		ATL2	TOXICOS EN LEVADURA 2 (.1)		Lus10037490 [exp]	20.9	0.7743

Compare expression of checked genes

Lus10017525 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.