Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41590 195 / 3e-62 Protein of unknown function (DUF567) (.1) AT2G38640 150 / 5e-45 Protein of unknown function (DUF567) (.1) AT1G80120 110 / 1e-29 Protein of unknown function (DUF567) (.1) AT3G15810 89 / 3e-21 Protein of unknown function (DUF567) (.1) AT3G14260 81 / 3e-18 Protein of unknown function (DUF567) (.1) AT1G53880 68 / 9e-13 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT1G53900 68 / 9e-13 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT1G63410 64 / 4e-12 Protein of unknown function (DUF567) (.1) AT1G53870 64 / 5e-12 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT1G53890 64 / 5e-12 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2), Protein of unknown function (DUF567) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028756 [exp] 494 / 9e-180 AT5G41590 194 / 7e-62 Protein of unknown function (DUF567) (.1) Lus10007423 [exp] 160 / 1e-48 AT2G38640 187 / 4e-60 Protein of unknown function (DUF567) (.1) Lus10010681 [exp] 147 / 1e-43 AT2G38640 184 / 6e-59 Protein of unknown function (DUF567) (.1) Lus10016666 [exp] 100 / 2e-25 AT3G15810 265 / 5e-90 Protein of unknown function (DUF567) (.1) Lus10038097 [exp] 99 / 2e-24 AT3G15810 216 / 8e-71 Protein of unknown function (DUF567) (.1) Lus10032602 [exp] 81 / 4e-18 AT3G15810 211 / 5e-69 Protein of unknown function (DUF567) (.1) Lus10007118 [exp] 74 / 5e-16 AT3G15810 191 / 4e-62 Protein of unknown function (DUF567) (.1) Lus10001484 [exp] 71 / 2e-14 AT3G14260 137 / 5e-40 Protein of unknown function (DUF567) (.1) Lus10008485 [exp] 70 / 3e-14 AT3G14260 132 / 4e-38 Protein of unknown function (DUF567) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G133200 [exp] 228 / 2e-75 AT5G41590 207 / 1e-67 Protein of unknown function (DUF567) (.1) Potri.001G098400 [exp] 225 / 5e-74 AT5G41590 201 / 3e-65 Protein of unknown function (DUF567) (.1) Potri.006G113400 [exp] 149 / 2e-44 AT2G38640 214 / 5e-71 Protein of unknown function (DUF567) (.1) Potri.016G143000 [exp] 143 / 5e-42 AT2G38640 214 / 1e-70 Protein of unknown function (DUF567) (.1) Potri.001G192000 [exp] 97 / 2e-24 AT3G15810 281 / 5e-97 Protein of unknown function (DUF567) (.1) Potri.003G032500 [exp] 87 / 8e-21 AT3G15810 264 / 2e-90 Protein of unknown function (DUF567) (.1) Potri.006G113800 [exp] 87 / 3e-20 AT1G80120 112 / 3e-30 Protein of unknown function (DUF567) (.1) Potri.006G067000 [exp] 86 / 3e-20 AT3G15810 229 / 1e-76 Protein of unknown function (DUF567) (.1) Potri.016G143500 [exp] 85 / 1e-19 AT1G80120 105 / 7e-28 Protein of unknown function (DUF567) (.1) Potri.001G106300 [exp] 84 / 2e-19 AT1G63410 132 / 8e-39 Protein of unknown function (DUF567) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF04525 [flax] [poplar] LOR LURP-one-related
Representative CDS sequence Show only first row Show all	>Lus10017526 pacid=23163205 polypeptide=Lus10017526 locus=Lus10017526.g ID=Lus10017526.BGIv1.0 annot-version=v1.0 ATGTTCTTCAATTTCAAATCTTGGTCGAAAACTGTCTACGACGAGGAATTCGATGAGCCAGATGCAGAAGTAGATCACGAAAAGCAATTGCAACTAGCAG AGGATCATGTCAAGGATCCGACGCCGGAGAGCACAAGCGGCACTTCCGCCGATGACGGAGTCGGCGGGTGGTCGACGTCGCTGACAGTCTGGAGGAAGTC TCTCGTGATGAACTGCAACGGATTCACGGTGATAAACGCCGACGGCGATCTCGTCTACCGCGTGGATAATTACTGTTGCCGCCCCGAGGAAATCACCCTC ATGGATGCCGCCGGGAACTCTGTACTCACATTGCTTCACCACACTAAGAGGCTTGGGCTGGTGGATAGCTGGCTGGTGTACGAAGGAGACGCGGAGGCGG CGGTGGGGGGACATATTCCGGCGACGGCGGAGACGGTGAAGTACGTGCCGAAGAAGCCGATCTGGTGCGTGAAGAAGCAGAAGAATCTGTTGCAGACGTC GCAGGGGAGTTCGGGGAACAGTGTTCTGGCGTATGTGTACAGAGGGAGTTCGGGGAAGAGGGACTATTCGTACGCCATCGAAGGATCGTACGGGCAGAGG TCTTGCAAGGTAGTGGAGTACGAATCGAGGAAGGAAGTGGCGGAGATAAGGAAGAAGGAGGCGGCGATCGGAGGAGTTTCGTTGGGGGCTGAAGTTTTCG TTTTGTCTACACAGTCCGGGTTCGATTCCGGCTTCGCCATGGCTCTGGTTTTGCTTCTAGATCAGATGTTTTCCTGA
AA sequence Show only first row Show all	>Lus10017526 pacid=23163205 polypeptide=Lus10017526 locus=Lus10017526.g ID=Lus10017526.BGIv1.0 annot-version=v1.0 MFFNFKSWSKTVYDEEFDEPDAEVDHEKQLQLAEDHVKDPTPESTSGTSADDGVGGWSTSLTVWRKSLVMNCNGFTVINADGDLVYRVDNYCCRPEEITL MDAAGNSVLTLLHHTKRLGLVDSWLVYEGDAEAAVGGHIPATAETVKYVPKKPIWCVKKQKNLLQTSQGSSGNSVLAYVYRGSSGKRDYSYAIEGSYGQR SCKVVEYESRKEVAEIRKKEAAIGGVSLGAEVFVLSTQSGFDSGFAMALVLLLDQMFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41590			Protein of unknown function (D...		Lus10017526 [exp]	0	1
AT4G32020			unknown protein		Lus10001936 [exp]	4.4	0.8600
AT5G20190			Tetratricopeptide repeat (TPR)...		Lus10043266 [exp]	5.2	0.8264
AT1G18210			Calcium-binding EF-hand family...		Lus10018012 [exp]	7.1	0.8544
AT1G45063			copper ion binding;electron ca...		Lus10019405 [exp]	9.8	0.8070
					Lus10009395 [exp]	10.3	0.7665
					Lus10039441 [exp]	11.8	0.8257
AT5G11000			Plant protein of unknown funct...		Lus10017128 [exp]	14.9	0.8226
AT1G75860			unknown protein		Lus10033130 [exp]	15.3	0.8315
AT4G00300			fringe-related protein (.1.2)		Lus10018823 [exp]	17.1	0.8341
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10041905 [exp]	21.8	0.8187

Compare expression of checked genes

Lus10017526 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.