Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64060 1370 / 0 RBOHAP108, ATRBOHF ,ATRBOH F ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) AT4G11230 1006 / 0 Riboflavin synthase-like superfamily protein (.1) AT1G19230 928 / 0 Riboflavin synthase-like superfamily protein (.1.2) AT5G47910 920 / 0 ATRBOHD, RBOHD respiratory burst oxidase homologue D (.1) AT5G51060 911 / 0 ATRBOHC, RHD2 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) AT1G09090 893 / 0 ATRBOHB-BETA, ATRBOHB respiratory burst oxidase homolog B (.1.2) AT5G07390 864 / 0 ATRBOHA respiratory burst oxidase homolog A (.1.2) AT4G25090 863 / 0 Riboflavin synthase-like superfamily protein (.1.2) AT5G60010 813 / 0 ferric reductase-like transmembrane component family protein (.1) AT3G45810 772 / 0 ferric reductase-like transmembrane component family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028755 [exp] 1643 / 0 AT1G64060 1486 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10032308 [exp] 1446 / 0 AT1G64060 1467 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10033423 [exp] 989 / 0 AT1G19230 1165 / 0.0 Riboflavin synthase-like superfamily protein (.1.2) Lus10034890 [exp] 978 / 0 AT1G19230 1181 / 0.0 Riboflavin synthase-like superfamily protein (.1.2) Lus10029896 [exp] 946 / 0 AT1G09090 1158 / 0.0 respiratory burst oxidase homolog B (.1.2) Lus10043017 [exp] 941 / 0 AT5G47910 1276 / 0.0 respiratory burst oxidase homologue D (.1) Lus10032517 [exp] 935 / 0 AT5G47910 1273 / 0.0 respiratory burst oxidase homologue D (.1) Lus10020644 [exp] 935 / 0 AT1G09090 1085 / 0.0 respiratory burst oxidase homolog B (.1.2) Lus10022434 [exp] 934 / 0 AT5G51060 1276 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G133300 [exp] 1444 / 0 AT1G64060 1489 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Potri.001G098300 [exp] 1443 / 0 AT1G64060 1476 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Potri.006G137300 [exp] 1024 / 0 AT1G19230 1203 / 0.0 Riboflavin synthase-like superfamily protein (.1.2) Potri.003G159800 [exp] 961 / 0 AT5G47910 1299 / 0.0 respiratory burst oxidase homologue D (.1) Potri.012G111600 [exp] 949 / 0 AT5G51060 1255 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Potri.005G026200 [exp] 942 / 0 AT1G09090 1165 / 0.0 respiratory burst oxidase homolog B (.1.2) Potri.015G109800 [exp] 938 / 0 AT5G51060 1253 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Potri.001G070900 [exp] 936 / 0 AT5G47910 1227 / 0.0 respiratory burst oxidase homologue D (.1) Potri.006G097200 [exp] 790 / 0 AT5G60010 1078 / 0.0 ferric reductase-like transmembrane component family protein (.1) Potri.016G112200 [exp] 760 / 0 AT5G60010 1052 / 0.0 ferric reductase-like transmembrane component family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0076 [flax] [poplar] FAD_Lum_binding PF08022 [flax] [poplar] FAD_binding_8 FAD-binding domain CL0220 [flax] [poplar] EF_hand PF08414 [flax] [poplar] NADPH_Ox Respiratory burst NADPH oxidase CL0091 [flax] [poplar] NAD_Ferredoxin PF08030 [flax] [poplar] NAD_binding_6 Ferric reductase NAD binding domain CL0328 [flax] [poplar] 2heme_cytochrom PF01794 [flax] [poplar] Ferric_reduct Ferric reductase like transmembrane component
Representative CDS sequence Show only first row Show all	>Lus10017527 pacid=23163190 polypeptide=Lus10017527 locus=Lus10017527.g ID=Lus10017527.BGIv1.0 annot-version=v1.0 ATGACAGGGGAGGAGTTCGTCGAGGTCACGCTTGATTTGCAGGACGATGACACGATTATCCTCCGGAGCGTCGAGCCGGCGACGGTCATTAATATCGCCG GCGGGAGTGATAGTGAAGGCGGAAGGGAGTTAGCCGCAGATCGTTCAACTCCTGCTTCTGCTCCGGCTTCCAGATCGCCGACGATCAAGCGGAGCTCGTC AAACAAGCTGCGGCAATTCTCTCATGAGCTGAAGGTGGAGGCGGTGGCGAAGGCGAGGCAGTTCTCTCAGGAGCTAAAAGCGGAGCTCAGAAGATTCTCC TGGAGCCACGGACTGTCGTCTCGTAATTCGCCGATGCACAATAATAATAATGGCGGTGCAGCTACTGGATTCGATTCAGCGTTGGCTGCTCGAGCTCTGA GGAGGCAGCGAGCTCAGCTCGATCGGACCAGGTCCGGCGCTCAGAAGGGCCTTTGTGGGGCAGATTTCGCACAATGCATAGGGATGAAGGACTCCAAGGA GTTTGCGCTCGAACTGTTCGACGCATTGGGGAGGAGAAGAAGGCTGAAGGTGGAGAAGATTAGCAGGGACGAGCTTTACGAGTTCTGGTCACAAATCACC GATGACAGCTTCGATTCACGCCTCCAGATCTTCTTCGACATGGTGGACAAGAATGAAGATGGTAGAATTACAGAGGAAGAAGTAAAAGAGATTATTATGT TAAGTGCCTCCGCAAACAAATTATCCAGATTAAAGGAACAGGCCGAGGAATATGCAGCACTGATCATGGAAGAGTTGGACCCCGAAAGACTTGGCTACAT CGAGTTATGGCAACTGGAAACGCTTCTTCTCCAGAAGGACACGTATCTAAACTACAGTCAAGCACTAAGCTACACGAGCCAAGCCCTGAGCCAGAACTTG CAAGGCCTAAGAAGGCGAAGCCCAATCAAGCGGATGAGCACAAAGTTGGTCTACTTTCTGGAAGAGAACTGGAAACGAATCTGGGTGGTGTCACTATGGA TCATGATCATGGTCGGGCTATTCACATGGAAGTTTCATCAGTACAAGCAGAAAGCCGCTTTCAAAGTGATGGGTTACTGTCTCCTCACGGCAAAAGGCGC AGCGGAGACTTTGAAGTTCAACATGGCCCTCATCCTCCTCCCAGTCTGTAGAAACACCATCACTCGGCTCAGGTCCACGCGGCTGGCTTTTCTTGTGCCT TTCGACGACAACATCAACTTTCACAAGACTATTGCGACAGCAATCGTGATTGGTGTTATTCTGCATGTTGGAAATCACCTCGCCTGCGATTTTCCTAGGC TCGAGGGTTCGTCTCTGCAGGACTACAATCTCTACCTTAGAAACGACTTTGGACACCATAAACCCAGTTACTGGAAACTGGTTAGAGGGCCAGAAGGTGT CACAGGGATTCTGATGGTGATTTGCATGATAATTGCTTTTACCCTGGCAACCCGATGGTTCAGGCGTAGCCTTATTAAACTACCTAAACCATTTGACAGA CTCACAGGGTTCAATGCCTTCTGGTACTCACACCATCTATTCGTCGTCGTCTATATCTTGCTCGTCGTCCATGGAGAATACCTCTACTTGGTCCATCACT GGTATAAAAAATCGACCTGGATGTACCTCTCTGTTCCTGTATTGTTGTACGCTGGTGAAAGAGCTCTCAGGTTCTTCAGGTCTGGCTCCCATACAGTCCG GCTATTGAAGGTTGCAATTTATCCTGGAAATGTGCTCACGTTGCAAATGTCCAAGCCTCCTCAGTTCCGGTACAAGAGCGGGCAGTACATGTTCGTTCAA TGCCCAGCAGTCTCTCCGTTTGAATGGCACCCATTTTCCATCACTTCTGCTCCAGGGGATGACTACCTTAGCGTTCACATTCGGCAGTTGGGCGACTGGA CACAAGAACTCAAAAGGGTATTTTCGGAGGCGTGTGAGCGCCCAGTTTCTGGGAAAAGCGGCCTTCTAAGAGCTGATGAAACCACCAAGAAAAGTTTGCC AAAGCTGTTAATAGATGGTCCTTACGGTGCCCCTGCGCAAGACTATCGGAAATATGATGTCTTGTTACTGGTCGGTCTCGGAATAGGGGCGACTCCTTTC ATCAGCATTCTCAAAGACTTGCAAAACAACATCGTGACGATGGAGGAGCAAGCGGATTCACTAACGGATGTCAACAGAGCATCAGAACAGAGCTTTGATG CTACGAGACGGAAAAAGGCTTTGAAGACCACTAATGCTTACTTCTACTGGGTAACAAGGGAGCAAGGCTCGTTCGATTGGTTCAAAGGCGTGATGAACGA AATAGCGGATCATGATCAGAGGGGGGTCATTGAGATGCACAATTACTTAACCAGCGTATACGAGGAAGGCGATGCCAGATCAACCCTCATTACCATGGTC CAAGCTTTGAACCATGCCAAGAACGGGGTGGACGTTGTCTCCGGCACCACTGTACGAACCCATTTTGCGAGGCCGAACTGGAAAAAGGTTCTTTCCAAAC TGAGTTCCAAGCACTGTAATGCAAGGATAGGGGTGTTCTACTGTGGAGCGCCAGTTCTGGCGAAAGAACTTGGGAAGCTCTGCTACGAGTTTAATCAAAA GGGTTCTACCAAGTTTGAGTTTCACAAGGAGCATTTCTAA
AA sequence Show only first row Show all	>Lus10017527 pacid=23163190 polypeptide=Lus10017527 locus=Lus10017527.g ID=Lus10017527.BGIv1.0 annot-version=v1.0 MTGEEFVEVTLDLQDDDTIILRSVEPATVINIAGGSDSEGGRELAADRSTPASAPASRSPTIKRSSSNKLRQFSHELKVEAVAKARQFSQELKAELRRFS WSHGLSSRNSPMHNNNNGGAATGFDSALAARALRRQRAQLDRTRSGAQKGLCGADFAQCIGMKDSKEFALELFDALGRRRRLKVEKISRDELYEFWSQIT DDSFDSRLQIFFDMVDKNEDGRITEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPERLGYIELWQLETLLLQKDTYLNYSQALSYTSQALSQNL QGLRRRSPIKRMSTKLVYFLEENWKRIWVVSLWIMIMVGLFTWKFHQYKQKAAFKVMGYCLLTAKGAAETLKFNMALILLPVCRNTITRLRSTRLAFLVP FDDNINFHKTIATAIVIGVILHVGNHLACDFPRLEGSSLQDYNLYLRNDFGHHKPSYWKLVRGPEGVTGILMVICMIIAFTLATRWFRRSLIKLPKPFDR LTGFNAFWYSHHLFVVVYILLVVHGEYLYLVHHWYKKSTWMYLSVPVLLYAGERALRFFRSGSHTVRLLKVAIYPGNVLTLQMSKPPQFRYKSGQYMFVQ CPAVSPFEWHPFSITSAPGDDYLSVHIRQLGDWTQELKRVFSEACERPVSGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYRKYDVLLLVGLGIGATPF ISILKDLQNNIVTMEEQADSLTDVNRASEQSFDATRRKKALKTTNAYFYWVTREQGSFDWFKGVMNEIADHDQRGVIEMHNYLTSVYEEGDARSTLITMV QALNHAKNGVDVVSGTTVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAKELGKLCYEFNQKGSTKFEFHKEHF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64060		RBOHAP108, ATRB...	ARABIDOPSIS THALIANA RESPIRATO...		Lus10017527 [exp]	0	1
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Lus10011238 [exp]	3.5	0.8782
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10010203 [exp]	4.0	0.9093
AT4G19185			nodulin MtN21 /EamA-like trans...		Lus10033316 [exp]	6.3	0.8662
AT1G61240			Protein of unknown function (D...		Lus10006728 [exp]	6.7	0.8846
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10037172 [exp]	9.8	0.8866
AT4G33420			Peroxidase superfamily protein...		Lus10029543 [exp]	10.4	0.8545
AT2G23810		TET8	tetraspanin8 (.1)		Lus10023216 [exp]	13.3	0.8885
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10041043 [exp]	13.7	0.8209
AT3G47000			Glycosyl hydrolase family prot...		Lus10005871 [exp]	14.2	0.8908
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10011930 [exp]	14.7	0.8663

Compare expression of checked genes

Lus10017527 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.