Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46960 1917 / 0 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT1G59760 448 / 6e-138 AtMTR4 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT2G06990 417 / 1e-126 HEN2 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT1G70070 273 / 7e-75 ISE2, EMB25, PDE317 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1) AT4G32700 82 / 3e-15 TEB TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) AT1G20960 76 / 1e-13 EMB1507 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) AT5G61140 76 / 2e-13 U5 small nuclear ribonucleoprotein helicase (.1.2) AT3G27730 74 / 7e-13 MER3, RCK ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1) AT2G42270 73 / 1e-12 U5 small nuclear ribonucleoprotein helicase (.1) AT4G14790 52 / 2e-06 ATSUV3, EDA15 embryo sac development arrest 15, ATP-dependent RNA helicase, mitochondrial (SUV3) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027599 [exp] 428 / 2e-130 AT2G06990 1633 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10024454 [exp] 382 / 3e-113 AT1G59760 1557 / 0.0 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10007442 [exp] 369 / 4e-109 AT1G59760 1523 / 0.0 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10022944 [exp] 318 / 2e-96 AT2G06990 713 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10013294 [exp] 263 / 5e-72 AT1G70070 1372 / 0.0 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1) Lus10030818 [exp] 224 / 3e-59 AT1G70070 1389 / 0.0 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1) Lus10022945 [exp] 149 / 2e-37 AT2G06990 887 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10022115 [exp] 87 / 1e-16 AT4G32700 2356 / 0.0 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) Lus10002528 [exp] 73 / 1e-14 AT3G46960 69 / 2e-14 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G041200 [exp] 2051 / 0 AT3G46960 1988 / 0.0 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.004G228700 [exp] 439 / 1e-134 AT1G59760 1581 / 0.0 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.006G078000 [exp] 421 / 7e-128 AT2G06990 1634 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.018G146001 [exp] 405 / 5e-127 AT2G06990 972 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.010G038500 [exp] 268 / 3e-73 AT1G70070 1502 / 0.0 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1) Potri.018G036600 [exp] 86 / 2e-16 AT4G32700 2501 / 0.0 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) Potri.012G097300 [exp] 74 / 1e-12 AT1G20960 3440 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Potri.001G348200 [exp] 73 / 2e-12 AT3G27730 1542 / 0.0 ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1) Potri.015G095500 [exp] 73 / 2e-12 AT1G20960 3326 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Potri.015G056501 [exp] 72 / 3e-12 AT5G61140 3496 / 0.0 U5 small nuclear ribonucleoprotein helicase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] PF08148 [flax] [poplar] DSHCT DSHCT (NUC185) domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10017528 pacid=23163161 polypeptide=Lus10017528 locus=Lus10017528.g ID=Lus10017528.BGIv1.0 annot-version=v1.0 ATGAATCGGATCCAAGCTACGAACGAGCTCGCATTCCGGGTGGGTTTCTCCGGCCACAGCGGCCACCTGAGGGTTGAGCCTATCACAGCCTTTGAGCGCG AAGACCCCATTAAGTCTCTTCCGGATTTCGTTCTTCCTCCTGCATTCCCAGAGGATACATATGAATCGATAAAGGAGCATATAGAGGAAAGGTACTTGCT ACCAAGGTTGGATGAGGATGAATTTTCTGCCCAGGTTGATGGGCGGCAGTGGGAATTCGACTGGTTTGAGAGGGTAAAAGTACCATTGGAGCCATCATTG CCTCGTTCAGTGGTGGTTCCAACATGGGAATTGCCCTTCAGAAGGAAACAGAAGGGGTCCCGACAAGGAATTTGGGAGCCTGATTCCGTTGAGGTGGATG TCTCAGAATTAACCGTTCAAGATCAAGAATGTGGCTCTCTCCCGCGCATGCCTGGCTCTGCAAAGGATTTTGTCAGAGGAAGCACCCACAATCGACCTTT TCGTCCTGGAGGTTTGGATGATGGACATTCTCTGGAGAGAATACTTCCTGATGGTGCTCGTAATGGTCAATGGGTACGTGAACTGCTGACTGGAGGCCCA GCTTTGACCACTCCTCCTGGCCTCAAAGAAGGACTAGACCTCGGAGATCTCAAGGCATATCCATGCACTTGGAATGTTTACAAAGACGAAAGTCCAGTTA GCAACACATCGGATGAAAAGTTGGGTGAGTTATCTGTTCAGTTTGATGACTTGTTCAAAAGGGCATGGGAAGAGGGGGATGTTACACAGCCAGAGGAAGA AGATCATTTGTCAGGAGAGGAATCTTCACTCTCTGATGTGGAAGTGAAGGCTGAGGGCATGATGTCTGACTTAAATGCTGATGTGAAGGTTGAGGGGCCA AACCCTGAAATCCAGTCTGAATCATCTCTTTTAGACGAGATCCTATCGGTTGAAGCAGGTGGATTCACAACCAGTTCAGACAGGAATGTTAAGGGTGATG GTAGCCAACAAAACGAGGCCCAGTCTCTATGTGGGGGTGGTGATTGGATTGCCAAAAACTTCAATGAACTTGTGCCTGACATGGCTCTCAATTTCCCTTT TGAATTGGATGCATTTCAAAAAGAGGCCATCTATTACCTTGAAAAGGGAGAATCTGTATTTGTTGCAGCTCATACATCAGCGGGGAAGACGGTGGTTGCT GAGTATGCATTTTCTCTCGCATCAAAACACTGCACCAGGGCTGTCTACACTGCTCCCATAAAAACCATCAGTAATCAAAAGTACCGCGATTTCTGTGAGA AGTTTGATGTTGGCCTGCTGACTGGTGATATTAGTTTGAGGCCAGAAGCTTCCTGTCTTATCATGACAACTGAGATATTAAGGTCAATGCTCTATCGGGG TGCAGATATCATTCGAGATATTGAATGGGTTATATTTGATGAAGTTCACTATGTCAATGATGTTGAAAGGGGTGTTGTGTGGGAGGAAGTTATAATAATG CTTCCAAGGCATGTCAATATTGTCCTCCTTTCGGCCACGGTCCCAAACACTAAAGAATTTGCCGAGTGGATTAGCAGAACAAAGAAAAAGGATATCCGTC TTACCGGAACAACAAAAAGACCAGTGCCATTGGAGCATTGCATATTTTACTCAGGAGAGCTATACACAATATGTGAGAGTGAAACACTGGTACCTCAGGG ATTGAAAGCTGCTAAAGATGCATGGAAGAAGAGAAATTCTAGTACTCCAGGTGGAAGTAGTGGACAAATACACGGGTCTTCTCCTCCCATGCAAAGTGGA GGTCGTGGTCAAAAACATGAAATGGCTAATCGGGGTAAACAGACTAAGCATTCTGGTTCTCAGAATTTAATAACTCGGGGGAATCAGAACAGTGGCACAG GTCAAAGTAATTGGGGTCCAAGGAGGTCAGAGTCTCAAATGTGGTTGCAGCTTGTAAACAAGCTTTCAAAGAAGTCCTTACTACCTGTAATTGTATTTTG TTTTTCAAAGAATTGGTGTGATAGATCTGCTGATAGCTTAACTGGGACTGACCTTACTAGTCGGTCTGAGAAAAGCGAGATCCGTGTTTTCTGCGACAAG GCTTTTTCAAGATTAAAGGGGTCTGATCGCAGTTTGCCGCAGATTGTAAGAGTTCAAAGTCTTTTGCATCGAGGGATTGGTGTGCATCATGCCGGTTTGC TTCCAATAGTGAAGGAGGTTGTTGAAATGCTGTTCTGTCGCGGTGTAATTAAGGTGCTGTTTTCAACCGAGACATTTGCCATGGGGGTTAATGCCCCAGC TAGAACGGTTATATTCGATTCTTTAAGAAAGTTTGATGGCAAAGAATTTAGACAATTGCTTCCCGGAGAATACACTCAGATGGCTGGTCGTGCTGGGAGA AGGGGTCTTGACAAAATCGGTACTGTAGTTGTTTTATGCCGTGATGAGATTCCAGATGAGAGTGATTTAAGACGCATGATAGTTGGAAGTGCTACAAGGC TTGAATCTCAGTTTCGGCTTACCTACATCATGATCTTGCATCTTCTTCGAGTTGAAGAACTAAAGGTGGAGGATATGCTGAAGAGAAGTTTTGCTGAGTT CCATGCTCAGAAGAAACTTCCTGAAACACAACAACTCCTTATGCGGAAGCTTGCTCAACCTGTAAAAACTATTGACTGTATCAAAGGCGAACCAGCAATT GAAGAGTATTACCAGATGCATTATGAAGCTGAAAAGTACAATGACCAAATATCGGTTGTAGTTATGCAGTCCCCTGCTGCTCAACAATATCTTAGCCCTG GAAGAGTTGTCGTTGTGAGATCACTATCAGCACAAGATCACTTGCTCGGAGTGGTTCTGAAAGCTCCTTCAGCCACTATGAAGCATCACATAGTTTTGGT GCTGAAACCTGATTTGCCACAATCGCTGCAAACATCCTCAAACACGCACGAACAGAAGAGCAGTGATTTTACTCAGGCTGTTATACTAATGCCGAAATCA AAACGTGGGTTTGATGAACAGTACATGACCTCAGTCAGTTCACGCAAAGGGACAGGAGCTGTGAACATAAAATTACCATATCAGGGTTTTGCAGCTGGTG TCAGTTATGAAGTCAGAGAGATGGATACGAAAGAATTTTTGTGCATATGTAACTGTAAAATCAAAATTGACCACGTACGGCTTCTGGAAGATGGTAATAG TGCGGCTTTCTCTAAGACGGTTCAAGATCTATTGAAATGCAGAATTGATGGGAAAAGCTATCCTCCTCCCGTAGATCCAGTGAAAGACCTGAAATTGAAG GATGTGGATCTTGTGGAAGCATATGGCAAATGGACAAACCTGATTCAGAAGATGGCCATGAATAAATGTCATGGGTGCATTAAGTTGAAAGATCATATGA CTTTGGCAAAAAAGATAAAGAGCCATAGGGATGAAGTTGATGCTTTGAAGTATGAAGTCTCAGATGAAGCACTAAAACAGATGCCCGATTTTCAAGGCCG GATAGATGTGCTGAAGGACATTGGGTGCATTGATTCTGATCACGTTGTCCAAATCAAAGGGCGAGTTGCCTGTGAGATGAACTCCGGGGAGGAACTAATA TCCACCGAGTGTTTGTTTGAAAATCAACTTGATGACCTTGAACCAGAGGAAGCTGTGGCTATAATGTCAGCCTTTGTCTTCCAGCAGAGGAACACTTCCG AGCCTTCACTCACGCCAAAACTTAAACAAGCTAAAGAAAGATTGTACAACACAGCAATACGGCTGGGAGAGCTCCAAGCCCGGTGCGATGTGCAAGTAAA CCCAGAAGAGTACGCGAAGGAAAATCTGAAATTTGGCCTCGTTGAAGTTGTCTATGAATGGGCAAAGGGCACTCCGTTTGCAGATATTTGTGAACTGACT GATGTTCCCGAAGGCCTGATAGTACGGACGATAGTGAGGCTGGACGAAACATGCCGTGAATTCAAGAACGCCGCTGCAATAATGGGGAACTCAGCACTCC ACAAGAAGATGGACTTTGCCTCCAACGCAATCAAGCGTGACATAGTTTTCGCAGCTAGCTTGTACGTCACAGGTGTATAA
AA sequence Show only first row Show all	>Lus10017528 pacid=23163161 polypeptide=Lus10017528 locus=Lus10017528.g ID=Lus10017528.BGIv1.0 annot-version=v1.0 MNRIQATNELAFRVGFSGHSGHLRVEPITAFEREDPIKSLPDFVLPPAFPEDTYESIKEHIEERYLLPRLDEDEFSAQVDGRQWEFDWFERVKVPLEPSL PRSVVVPTWELPFRRKQKGSRQGIWEPDSVEVDVSELTVQDQECGSLPRMPGSAKDFVRGSTHNRPFRPGGLDDGHSLERILPDGARNGQWVRELLTGGP ALTTPPGLKEGLDLGDLKAYPCTWNVYKDESPVSNTSDEKLGELSVQFDDLFKRAWEEGDVTQPEEEDHLSGEESSLSDVEVKAEGMMSDLNADVKVEGP NPEIQSESSLLDEILSVEAGGFTTSSDRNVKGDGSQQNEAQSLCGGGDWIAKNFNELVPDMALNFPFELDAFQKEAIYYLEKGESVFVAAHTSAGKTVVA EYAFSLASKHCTRAVYTAPIKTISNQKYRDFCEKFDVGLLTGDISLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDVERGVVWEEVIIM LPRHVNIVLLSATVPNTKEFAEWISRTKKKDIRLTGTTKRPVPLEHCIFYSGELYTICESETLVPQGLKAAKDAWKKRNSSTPGGSSGQIHGSSPPMQSG GRGQKHEMANRGKQTKHSGSQNLITRGNQNSGTGQSNWGPRRSESQMWLQLVNKLSKKSLLPVIVFCFSKNWCDRSADSLTGTDLTSRSEKSEIRVFCDK AFSRLKGSDRSLPQIVRVQSLLHRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVIFDSLRKFDGKEFRQLLPGEYTQMAGRAGR RGLDKIGTVVVLCRDEIPDESDLRRMIVGSATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHAQKKLPETQQLLMRKLAQPVKTIDCIKGEPAI EEYYQMHYEAEKYNDQISVVVMQSPAAQQYLSPGRVVVVRSLSAQDHLLGVVLKAPSATMKHHIVLVLKPDLPQSLQTSSNTHEQKSSDFTQAVILMPKS KRGFDEQYMTSVSSRKGTGAVNIKLPYQGFAAGVSYEVREMDTKEFLCICNCKIKIDHVRLLEDGNSAAFSKTVQDLLKCRIDGKSYPPPVDPVKDLKLK DVDLVEAYGKWTNLIQKMAMNKCHGCIKLKDHMTLAKKIKSHRDEVDALKYEVSDEALKQMPDFQGRIDVLKDIGCIDSDHVVQIKGRVACEMNSGEELI STECLFENQLDDLEPEEAVAIMSAFVFQQRNTSEPSLTPKLKQAKERLYNTAIRLGELQARCDVQVNPEEYAKENLKFGLVEVVYEWAKGTPFADICELT DVPEGLIVRTIVRLDETCREFKNAAAIMGNSALHKKMDFASNAIKRDIVFAASLYVTGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46960			RNA helicase, ATP-dependent, S...		Lus10017528 [exp]	0	1
AT1G17210		ATILP1	ARABIDOPSIS IAP-LIKE PROTEIN, ...		Lus10023288 [exp]	1.4	0.9579
AT5G47690			binding (.1.2.3)		Lus10038777 [exp]	1.4	0.9642
AT1G77300		ASHH2, CCR1, SD...	LAZARUS 2, CAROTENOID CHLOROPL...		Lus10028662 [exp]	2.0	0.9460
AT1G08130		ATLIG1	DNA ligase 1 (.1)		Lus10016149 [exp]	2.2	0.9451
AT2G47210	MYB		myb-like transcription factor ...		Lus10015735 [exp]	4.5	0.9289
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10015946 [exp]	4.6	0.9423
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10005782 [exp]	4.8	0.9280
AT1G50140			P-loop containing nucleoside t...		Lus10013429 [exp]	4.9	0.9350
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Lus10005726 [exp]	5.2	0.9578
AT3G19510	HD	HAT3.1	Homeodomain-like protein with ...		Lus10024826 [exp]	5.6	0.9234

Compare expression of checked genes

Lus10017528 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.