Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46740 189 / 2e-54 UBP21 ubiquitin-specific protease 21 (.1) AT4G17895 174 / 1e-48 UBP20 ubiquitin-specific protease 20 (.1) AT5G57990 114 / 7e-28 UBP23 ubiquitin-specific protease 23 (.1) AT4G31670 84 / 1e-17 UBP18 ubiquitin-specific protease 18 (.1) AT2G24640 76 / 6e-15 UBP19 ubiquitin-specific protease 19 (.1.2) AT1G17110 73 / 9e-14 UBP15 ubiquitin-specific protease 15 (.1.2) AT5G65450 72 / 9e-14 UBP17 ubiquitin-specific protease 17 (.1) AT4G24560 69 / 2e-12 UBP16 ubiquitin-specific protease 16 (.1) AT2G22310 61 / 2e-10 ATUBP4 ubiquitin-specific protease 4 (.1.2) AT5G10790 58 / 3e-09 UBP22 ubiquitin-specific protease 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043127 [exp] 266 / 8e-84 AT5G46740 362 / 2e-115 ubiquitin-specific protease 21 (.1) Lus10043126 [exp] 266 / 1e-82 AT5G46740 367 / 6e-116 ubiquitin-specific protease 21 (.1) Lus10032623 [exp] 263 / 3e-79 AT5G46740 366 / 1e-110 ubiquitin-specific protease 21 (.1) Lus10036607 [exp] 103 / 5e-24 AT5G57990 536 / 5e-178 ubiquitin-specific protease 23 (.1) Lus10035825 [exp] 102 / 2e-23 AT5G57990 537 / 3e-178 ubiquitin-specific protease 23 (.1) Lus10020116 [exp] 88 / 9e-19 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10026918 [exp] 88 / 9e-19 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10009273 [exp] 61 / 8e-10 AT4G24560 585 / 0.0 ubiquitin-specific protease 16 (.1) Lus10041705 [exp] 59 / 2e-09 AT4G39910 682 / 0.0 ubiquitin-specific protease 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G092400 [exp] 226 / 2e-67 AT4G17895 358 / 2e-112 ubiquitin-specific protease 20 (.1) Potri.001G142000 [exp] 226 / 4e-67 AT5G46740 350 / 9e-109 ubiquitin-specific protease 21 (.1) Potri.018G107500 [exp] 113 / 2e-27 AT5G57990 580 / 0.0 ubiquitin-specific protease 23 (.1) Potri.006G185200 [exp] 109 / 5e-26 AT5G57990 620 / 0.0 ubiquitin-specific protease 23 (.1) Potri.018G009500 [exp] 86 / 4e-18 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.006G270600 [exp] 84 / 1e-17 AT2G24640 698 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.001G378900 [exp] 76 / 8e-15 AT1G17110 848 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.011G095200 [exp] 71 / 3e-13 AT1G17110 799 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.018G017000 [exp] 64 / 3e-11 AT5G10790 615 / 0.0 ubiquitin-specific protease 22 (.1) Potri.006G266100 [exp] 64 / 4e-11 AT5G10790 628 / 0.0 ubiquitin-specific protease 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Lus10017529 pacid=23163216 polypeptide=Lus10017529 locus=Lus10017529.g ID=Lus10017529.BGIv1.0 annot-version=v1.0 ATGGGGTACTCTTGTTTCGTTACTTCAATCTTGCAGTGCTTTACGGACACTGTGCCTCTTGTGATGGCTTTACGAACTCACAACAATTCCTCACCCTGTG AGCGCGGCAGTGATGGATTCTGCGCACTTGTTGCACTTCGTGATCATATTCAAGATTCTTTGACTTCTTCAGAGGATGCTATTGACCCCGGAAATTTTCT TGACAAATTAAGCCGTATCTTATGCTGTCTTCTCTATGCTTTGTGGTTATCCTCTTTATTAGGTATTTCATCGTCTTTCCAAAGTTATCAACAGGAAGAT GCACATGAATTCATGCACTACTTGCTGGGTAGGCTCAGGAGATGCTGTTTACATCAGAATCCAGCTGAAACATCCTCATCGTCAGAAGCTGATAACATTG TGCAGCAGCTTTCTGGGGGTCAGCTTCTAGGCAAACTGAAGTGTTGCAGTTGTGGCCACGTATCTGTCAACTATGAGCCCTTGATTGACTTGAGCTTGGA CATCGAAATGGTGGATACTCTCAGCGCTGCGCTAGAGTCTTTCACTAAAGTGGAGAGAGTGGAAACAGAGGCCTATAATTCCAAAGATAGAGCAATCAGG GAGAAGCAGCTTATGTTGGACTGGAGTCCTCCGGTTGCTATTTTGCATCTGAAGAGATTTAAGAGTAATGAACATTCAACTGAGAAGATTGACAAGCATG TGCAGTTCCCTCTGGAGTTAGATTTGACGCCATACTCCAATCATGGCCAGGATGATCATGTCACTAAATGTGAAGAGGATTTCGTACTCTCTCGGGCGGC ATACATTTTGATGTATGCGAGAAAGGGGACGGCTTGGTCTACGAGTCTGATGGAGGTTAACCAAGGTTTGAGCAACGAAAATAGTGATGCTGCCGAGGTT GTAAAGTGCTTCTCAGATGATGCTGCTGATAATGAGCCTCGGGATGGTATGTTTAGGTTTGATGACGAGGAGTTGTGGCCCAAGCTTACCCATCAAGCCA CGTATGGCAGAAAGAAATGGCAGCGTTGA
AA sequence Show only first row Show all	>Lus10017529 pacid=23163216 polypeptide=Lus10017529 locus=Lus10017529.g ID=Lus10017529.BGIv1.0 annot-version=v1.0 MGYSCFVTSILQCFTDTVPLVMALRTHNNSSPCERGSDGFCALVALRDHIQDSLTSSEDAIDPGNFLDKLSRILCCLLYALWLSSLLGISSSFQSYQQED AHEFMHYLLGRLRRCCLHQNPAETSSSSEADNIVQQLSGGQLLGKLKCCSCGHVSVNYEPLIDLSLDIEMVDTLSAALESFTKVERVETEAYNSKDRAIR EKQLMLDWSPPVAILHLKRFKSNEHSTEKIDKHVQFPLELDLTPYSNHGQDDHVTKCEEDFVLSRAAYILMYARKGTAWSTSLMEVNQGLSNENSDAAEV VKCFSDDAADNEPRDGMFRFDDEELWPKLTHQATYGRKKWQR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46740		UBP21	ubiquitin-specific protease 21...		Lus10017529 [exp]	0	1
AT5G53840			F-box/RNI-like/FBD-like domain...		Lus10029951 [exp]	2.0	0.8172
					Lus10027544 [exp]	4.9	0.7283
AT2G33670		ATMLO5, MLO5	MILDEW RESISTANCE LOCUS O 5, S...		Lus10030729 [exp]	8.9	0.6848
AT1G55790			Domain of unknown function (DU...		Lus10032898 [exp]	11.8	0.6717
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10039502 [exp]	13.0	0.7237
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023904 [exp]	15.5	0.7122
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10039501 [exp]	16.0	0.7166
AT4G11530		CRK34	cysteine-rich RLK (RECEPTOR-li...		Lus10022285 [exp]	17.0	0.7122
					Lus10010383 [exp]	18.3	0.7122
AT5G60710			Zinc finger (C3HC4-type RING f...		Lus10041321 [exp]	19.4	0.6957

Compare expression of checked genes

Lus10017529 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.