Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67390 56 / 5e-08 F-box family protein (.1) AT5G22660 53 / 2e-07 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) AT1G16930 49 / 5e-06 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G60610 49 / 6e-06 F-box/RNI-like superfamily protein (.1) AT5G53840 48 / 1e-05 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G60400 45 / 8e-05 F-box/RNI-like superfamily protein (.1) AT5G22700 45 / 9e-05 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G02910 43 / 0.0003 F-box/RNI-like superfamily protein (.1.2) AT5G38570 43 / 0.0004 F-box/RNI-like superfamily protein (.1) AT5G44980 42 / 0.0006 F-box/RNI-like/FBD-like domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028664 [exp] 408 / 4e-136 AT5G50260 59 / 6e-09 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10028675 [exp] 290 / 1e-94 AT1G67190 44 / 1e-04 F-box/RNI-like superfamily protein (.1.2) Lus10042272 [exp] 132 / 3e-34 AT4G03220 65 / 4e-11 Protein with RNI-like/FBD-like domains (.1) Lus10037440 [exp] 77 / 9e-15 AT1G69630 84 / 5e-17 F-box/RNI-like superfamily protein (.1) Lus10037289 [exp] 76 / 2e-14 AT5G02920 61 / 4e-10 F-box/RNI-like superfamily protein (.1) Lus10029083 [exp] 76 / 3e-14 AT1G67390 54 / 6e-08 F-box family protein (.1) Lus10034290 [exp] 73 / 1e-13 AT5G02910 53 / 2e-07 F-box/RNI-like superfamily protein (.1.2) Lus10029952 [exp] 72 / 1e-13 AT5G03100 68 / 1e-12 F-box/RNI-like superfamily protein (.1) Lus10018543 [exp] 73 / 2e-13 AT1G03510 534 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G099400 [exp] 53 / 3e-07 AT5G44950 77 / 1e-14 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.015G011200 [exp] 50 / 2e-06 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.015G002001 [exp] 48 / 1e-05 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.001G395000 [exp] 45 / 0.0001 AT4G14103 89 / 4e-19 F-box/RNI-like superfamily protein (.1.2) Potri.015G002100 [exp] 43 / 0.0003 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.013G146800 [exp] 43 / 0.0004 AT1G69630 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Potri.011G104200 [exp] 43 / 0.0005 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 42 / 0.0007 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104300 [exp] 42 / 0.0007 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017530 pacid=23163118 polypeptide=Lus10017530 locus=Lus10017530.g ID=Lus10017530.BGIv1.0 annot-version=v1.0 ATGGACCGATTCTCGGCTCTGCCGGATGAAATAATCCATCTGATTATGGCACGGCTGTATTCGGATCCACTATACTCAAAGGGAGCGGCCAAACTAGCCG TGCTTTCGAAAAGGTGGATGAACCTCTGGCTCTCATACCCAATCCTTGAAATCGACGGAGAATGCACTGAAAAAGGATTCTTAGCTTCCATCACGAAGAA ATTCAGTCCCTGCTGCAGCAACTTGAATCTCCAAGAAATCCGAGTATCTTTCAATTATTTCGAGCATGGCCCATCGGCTTATCCCAATTTTCTTCCCGAT GCCTTGGCTATGATTTCTAGCGGAGAACCCGAAAAGATCGATATCGAAGCCTACTATGATTACTCAATCACAGTCGCCCCTTTGATTACCAACCGCCGCC TCAGGATCCTCAAGCTGAGAGGCTGCAAACTTGGACGACTATCAACTTACAAATTCGGCATGATCATAAACCTCCGAGAACTCCATCTCTCAGACTACAG CAGCGACGACGATACCTTAAACCGCCTGATTGCAAGTGCCCCTTCATTAGAGACTTTGAAACTGGATATCCCTAAATTAGGTGTCCACAAGAGGCTTCAA ATCTGCAACAATCCCAAGTTGAAGTACATCGTCTTCAATAACTGTAGAGCAGATGACCTCATTCAAATCAAAGGTGCACATTCTCTCGATACCCTAGAGT TCTTCTGTTCGACTGATGTCAATCCACATTTCGAGATTTCCACCTCACCTACTTCAACCTTGCGACTGCTCAAGATTCGACATCATTGTTCCAGAAAAAC ACTTAGTGTTGACAAGCTGATCTCGGCAATTCCGTGTCTAGAGGAGCTTTACTTATCTGATATATATGAAGTAACCAAACTCAACATCATAAACCCTACC CTTCGGCGCGTGACCATGAATAATAATAATTATCCCACTCGGTACAAGTTTCGACCAGTTAGTTACACGGTCCGAATAGATGCTCCGGAACTTGTTCGCC TCTGTTGTTATGAATCTATGGGATTTCTTCCTTTATTCAGTTTCGCGACTGATCTTCAAGCATCGGCGAGTTTCATTGGCCGCTTGTCAAGTAGGAATGG TGTAATTATGACACACAAAGTGTCTGCTGAGTTGAAGTACTTCCTCTCCAGTTTAAGCAAACAATTTCGAACTGTAGAGATCAGCTTCCTAAGCTTACCC GCTGTGCAGCATGCGTTTGGCTGGGATCAAATTCGAGATGGCTCGTCTGCTGTAGTCATCCATCAACTCTATTATTTCGGCACGGATCTCTTAGATTTAC ATAAGATGAGCGTTATTTTTGACGGTTTGTTCTGGGCTTGTCATCCTAAATATGTATCGGTACTTAGACGCACCGGAGATTTGGACCAGGATTGGTCTTC ATGCCTTGAGTTTCATGCAAGCGTTGGACTCGCAAACTAA
AA sequence Show only first row Show all	>Lus10017530 pacid=23163118 polypeptide=Lus10017530 locus=Lus10017530.g ID=Lus10017530.BGIv1.0 annot-version=v1.0 MDRFSALPDEIIHLIMARLYSDPLYSKGAAKLAVLSKRWMNLWLSYPILEIDGECTEKGFLASITKKFSPCCSNLNLQEIRVSFNYFEHGPSAYPNFLPD ALAMISSGEPEKIDIEAYYDYSITVAPLITNRRLRILKLRGCKLGRLSTYKFGMIINLRELHLSDYSSDDDTLNRLIASAPSLETLKLDIPKLGVHKRLQ ICNNPKLKYIVFNNCRADDLIQIKGAHSLDTLEFFCSTDVNPHFEISTSPTSTLRLLKIRHHCSRKTLSVDKLISAIPCLEELYLSDIYEVTKLNIINPT LRRVTMNNNNYPTRYKFRPVSYTVRIDAPELVRLCCYESMGFLPLFSFATDLQASASFIGRLSSRNGVIMTHKVSAELKYFLSSLSKQFRTVEISFLSLP AVQHAFGWDQIRDGSSAVVIHQLYYFGTDLLDLHKMSVIFDGLFWACHPKYVSVLRRTGDLDQDWSSCLEFHASVGLAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22660			FBD, F-box, Skp2-like and Leuc...		Lus10017530 [exp]	0	1
AT5G16260		ELF9	EARLY FLOWERING 9, RNA binding...		Lus10020230 [exp]	2.6	0.8670
AT5G20350		TIP1	TIP GROWTH DEFECTIVE 1, Ankyri...		Lus10008037 [exp]	7.9	0.8595
AT5G45300	BZR	BAM8, BMY2	BETA-AMYLASE 8, beta-amylase 2...		Lus10035679 [exp]	10.1	0.7940
AT1G26380			FAD-binding Berberine family p...		Lus10038437 [exp]	11.5	0.8114
AT3G14075			Mono-/di-acylglycerol lipase, ...		Lus10037690 [exp]	15.7	0.8362
AT5G42220			Ubiquitin-like superfamily pro...		Lus10021830 [exp]	19.1	0.8291
AT1G60670			Protein of unknown function (D...		Lus10012911 [exp]	19.4	0.8197
AT5G64830			programmed cell death 2 C-term...		Lus10021075 [exp]	19.7	0.7744
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10041646 [exp]	21.6	0.8296
AT5G37830		OXP1	oxoprolinase 1 (.1)		Lus10024411 [exp]	22.4	0.8461

Compare expression of checked genes

Lus10017530 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.