Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46150 78 / 2e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G05975 47 / 2e-06 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G54200 47 / 3e-06 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G64065 46 / 6e-06 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036403 [exp] 75 / 2e-16 AT2G46150 156 / 8e-48 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10007904 [exp] 74 / 5e-16 AT2G46150 159 / 1e-48 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10018185 [exp] 42 / 0.0002 AT3G54200 153 / 9e-47 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10025649 [exp] 42 / 0.0002 AT3G54200 152 / 2e-46 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10032671 [exp] 41 / 0.0003 AT3G54200 141 / 1e-41 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10043084 [exp] 41 / 0.0003 AT3G54200 141 / 2e-41 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10032309 [exp] 0 / 1 AT2G46150 65 / 7e-12 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G165100 [exp] 98 / 4e-25 AT2G46150 184 / 1e-58 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G133400 [exp] 94 / 1e-23 AT2G46150 164 / 7e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G098100 [exp] 93 / 3e-23 AT2G46150 171 / 2e-53 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G098200 [exp] 57 / 5e-10 AT1G64065 102 / 2e-27 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G112800 [exp] 52 / 2e-08 AT3G54200 159 / 7e-49 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G142300 [exp] 50 / 3e-07 AT3G54200 162 / 3e-50 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G090400 [exp] 42 / 0.0001 AT4G23930 166 / 2e-52 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10017531 pacid=23163096 polypeptide=Lus10017531 locus=Lus10017531.g ID=Lus10017531.BGIv1.0 annot-version=v1.0 ATGTCAATCAATCCCGAAACCAACCCGGATCAATTCCACACTCGACTCAAACCCAGCCGATCACGCGATCTCGATCAACCCTCCCAATCCGAATCCCACC TCCTCCCCAATCGGACTTGGCCCAGGCTCTTCGCCTGCTCCGCCGCGGTCCTCCTCATGTCCTCCATGCTCTTCCTAATCCTCCTCTTCACAGCCTTCCG AGTCAAGGACCCCACCGTCTCCCTCTCCGGACTCACCGCCACTCCCGCCGCCAATCTCACCGGAAACTCTACTTTTTTCGCCGACGTCAAGGTGAAGAAC CCGAATGCGGCGGCGTTCAGGTTCGGCGTCGGGGTGGCGGCGATTTACTACGGGGAGACGGTGGTGGGGGAGGCGGCGACGCCGGCGGGGAAGGCGAAGG CGAGGGGCGCGGTTCGTATGAGCGTGGCGGTGGAGATTGTTGGGGAGAAGTTATCCGGTGTTTCGCGGCTTAGTGAGGACGTGAAATCGGGGACGTTGGT GATGAGCTGTGTGACTAGGATACCTGGGGATGTGAAGATGATTGGGAAGAAACACATGGTGGTTAAAGTTAAGTGCGGAGTTAATTATGATTATGTTAAG GGGGAGCTTACGGCTGGTGATTGCATACAGTACACCATTAAGTAG
AA sequence Show only first row Show all	>Lus10017531 pacid=23163096 polypeptide=Lus10017531 locus=Lus10017531.g ID=Lus10017531.BGIv1.0 annot-version=v1.0 MSINPETNPDQFHTRLKPSRSRDLDQPSQSESHLLPNRTWPRLFACSAAVLLMSSMLFLILLFTAFRVKDPTVSLSGLTATPAANLTGNSTFFADVKVKN PNAAAFRFGVGVAAIYYGETVVGEAATPAGKAKARGAVRMSVAVEIVGEKLSGVSRLSEDVKSGTLVMSCVTRIPGDVKMIGKKHMVVKVKCGVNYDYVK GELTAGDCIQYTIK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46150			Late embryogenesis abundant (L...		Lus10017531 [exp]	0	1
AT1G02820			Late embryogenesis abundant 3 ...		Lus10027986 [exp]	1.4	0.8846
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10032976 [exp]	2.4	0.8709
AT3G45010		SCPL48	serine carboxypeptidase-like 4...		Lus10037380 [exp]	2.8	0.8267
AT1G15760			Sterile alpha motif (SAM) doma...		Lus10041687 [exp]	3.2	0.8296
AT4G36830		HOS3-1	GNS1/SUR4 membrane protein fam...		Lus10022493 [exp]	3.5	0.8456
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10013952 [exp]	3.5	0.8371
AT3G10870		ATMES17, MES17	ARABIDOPSIS THALIANA METHYL ES...		Lus10034252 [exp]	3.7	0.8268
AT1G64700			unknown protein		Lus10001663 [exp]	7.7	0.8270
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022415 [exp]	15.2	0.7742
AT4G40080			ENTH/ANTH/VHS superfamily prot...		Lus10023837 [exp]	16.6	0.8136

Compare expression of checked genes

Lus10017531 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.