Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41600 270 / 3e-91 RTNLB4, BTI3 Reticulan like protein B4, VIRB2-interacting protein 3 (.1) AT4G23630 267 / 1e-89 RTNLB1, BTI1 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) AT1G64090 266 / 2e-89 RTNLB3 Reticulan like protein B3 (.1.2) AT4G11220 254 / 1e-84 RTNLB2, BTI2 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) AT2G46170 224 / 5e-73 Reticulon family protein (.1.2) AT3G61560 209 / 5e-67 Reticulon family protein (.1.2) AT3G10260 159 / 9e-48 Reticulon family protein (.1.2.3) AT4G01230 156 / 1e-46 Reticulon family protein (.1) AT3G18260 129 / 2e-36 Reticulon family protein (.1) AT3G10915 102 / 4e-26 Reticulon family protein (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028753 [exp] 338 / 2e-109 AT5G35360 888 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10032313 [exp] 288 / 1e-97 AT4G23630 318 / 1e-109 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Lus10038833 [exp] 257 / 7e-86 AT5G41600 308 / 3e-106 Reticulan like protein B4, VIRB2-interacting protein 3 (.1) Lus10014948 [exp] 254 / 9e-85 AT4G23630 306 / 3e-105 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Lus10027548 [exp] 253 / 1e-84 AT1G64090 316 / 2e-109 Reticulan like protein B3 (.1.2) Lus10027546 [exp] 252 / 6e-84 AT4G11220 307 / 5e-106 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) Lus10024687 [exp] 248 / 2e-82 AT1G64090 227 / 2e-74 Reticulan like protein B3 (.1.2) Lus10039307 [exp] 241 / 7e-80 AT1G64090 307 / 4e-106 Reticulan like protein B3 (.1.2) Lus10041080 [exp] 234 / 1e-76 AT2G46170 320 / 5e-111 Reticulon family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G097700 [exp] 258 / 3e-86 AT4G23630 314 / 2e-108 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.015G027300 [exp] 252 / 8e-84 AT4G23630 310 / 6e-107 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.003G133600 [exp] 245 / 2e-81 AT4G23630 284 / 8e-97 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.012G035600 [exp] 241 / 7e-80 AT4G23630 296 / 2e-101 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.014G091200 [exp] 240 / 1e-79 AT2G46170 318 / 3e-110 Reticulon family protein (.1.2) Potri.002G165400 [exp] 219 / 4e-71 AT2G46170 311 / 1e-107 Reticulon family protein (.1.2) Potri.013G160900 [exp] 173 / 2e-53 AT4G11220 193 / 4e-61 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) Potri.002G055600 [exp] 161 / 1e-48 AT3G10260 330 / 2e-115 Reticulon family protein (.1.2.3) Potri.005G206800 [exp] 154 / 5e-46 AT3G10260 315 / 3e-109 Reticulon family protein (.1.2.3) Potri.015G044300 [exp] 124 / 2e-34 AT3G18260 251 / 1e-84 Reticulon family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0484 [flax] [poplar] Peroxisome PF02453 [flax] [poplar] Reticulon Reticulon
Representative CDS sequence Show only first row Show all	>Lus10017533 pacid=23163098 polypeptide=Lus10017533 locus=Lus10017533.g ID=Lus10017533.BGIv1.0 annot-version=v1.0 ATGACTGAGCACAAGGAAGAGTCACTGATGGATAAGATATCGGAGAAGATCCACGGAGGCGATGATTCTTCTTCTTCGTCTTCCGATTCCGATCACGACG ATAAGCCCAAGAAGTCGTCCTCCCCGGCGTCTCCTTCATCGATCAAGTCCAAAATCTATCGTCTCTTTGGACGTGAGCAGCCTGTTCACAAGGTTCTCGG TGGTGGCAAACGTAGGTTCCTCATTTCGCCGCCGATGTTTTCCTGTGGAGGGACAAGAAGATTTCGGCAGGAGGGGGTGGGGGGGCCAGCCTTGGCAACT GCTGCATGGGTTCTCTTTGAATTGCTCGAGTACCACCTTCTGACACTGGTTTGCCATGCTTTGATCCTCGCGTTGGCAGTTTTGTTTCTGTGGTCCAATG CCTCCACGTTTATCAACAAATCAACCCCGCATATTCCCCAGGTCCATATCCCTGAGGATGCAGTTCTGCAATTTGCTTCTGGACTTAGGTATGAGATCAA CCGTGGATTGACTGCTCTTCGTGATATAGCCTCAGGAAAGGATCTAAAAAATTTCCTTGGTGTCATTGCTGGTTTATGGATCCTGTCAATCTTGGGGAGC TGTTGCAACTTTCTGACTCTGTTCTATATCGTATTTGTGCTGCTCCACACGGTGCCAGTCTTGTATGAGAAGTATGAAGATAAAGTAGATGCATTTGGGG AGAAGGCATGGATCGAGATCAAGAAGCAGTATGCAGTGTTCGACGAGAAGGTGCTAAGTAAGGTGTTGAGTAAGATCCCTAGAGGCCCATCGAAGGACAA GAAGAAGGCTTAG
AA sequence Show only first row Show all	>Lus10017533 pacid=23163098 polypeptide=Lus10017533 locus=Lus10017533.g ID=Lus10017533.BGIv1.0 annot-version=v1.0 MTEHKEESLMDKISEKIHGGDDSSSSSSDSDHDDKPKKSSSPASPSSIKSKIYRLFGREQPVHKVLGGGKRRFLISPPMFSCGGTRRFRQEGVGGPALAT AAWVLFELLEYHLLTLVCHALILALAVLFLWSNASTFINKSTPHIPQVHIPEDAVLQFASGLRYEINRGLTALRDIASGKDLKNFLGVIAGLWILSILGS CCNFLTLFYIVFVLLHTVPVLYEKYEDKVDAFGEKAWIEIKKQYAVFDEKVLSKVLSKIPRGPSKDKKKA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64090		RTNLB3	Reticulan like protein B3 (.1....		Lus10017533 [exp]	0	1
AT2G18030			Peptide methionine sulfoxide r...		Lus10041922 [exp]	6.9	0.8335
AT4G15248	CO		B-box type zinc finger family ...		Lus10015097 [exp]	9.2	0.8434
AT2G25140		HSP98.7, CLPB-M...	HEAT SHOCK PROTEIN 98.7, CASEI...		Lus10041018 [exp]	12.7	0.8377
AT4G02450			HSP20-like chaperones superfam...		Lus10000340 [exp]	16.2	0.8264
AT5G11280			unknown protein		Lus10002898 [exp]	17.3	0.8239
AT1G12240		ATBETAFRUCT4, V...	VACUOLAR INVERTASE, Glycosyl h...		Lus10004340 [exp]	22.0	0.8165
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10040102 [exp]	22.4	0.7989
AT2G36330			Uncharacterised protein family...		Lus10032147 [exp]	24.4	0.8171
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Lus10031434 [exp]	25.1	0.8209
AT2G32120		HSP70T-2	heat-shock protein 70T-2 (.1.2...		Lus10041207 [exp]	32.2	0.8158

Compare expression of checked genes

Lus10017533 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.