Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35360 889 / 0 CAC2 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) AT1G03090 428 / 1e-142 MCCA methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) AT1G36160 221 / 2e-62 GSD1, PAS3, GK, EMB22, AT-ACC1, ACC1 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) AT1G36180 217 / 1e-60 ACC2 acetyl-CoA carboxylase 2 (.1.2) AT1G29900 56 / 9e-08 VEN3, CARB VENOSA 3, carbamoyl phosphate synthetase B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028753 [exp] 1046 / 0 AT5G35360 888 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10028196 [exp] 997 / 0 AT5G35360 892 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10042899 [exp] 926 / 0 AT5G35360 821 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10042901 [exp] 556 / 0 AT5G35360 491 / 2e-171 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10042623 [exp] 428 / 2e-142 AT1G03090 1064 / 0.0 methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) Lus10028199 [exp] 312 / 5e-105 AT5G35360 296 / 1e-99 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10022078 [exp] 233 / 8e-73 AT1G03090 405 / 4e-138 methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) Lus10024748 [exp] 219 / 2e-61 AT1G36160 2397 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Lus10006934 [exp] 214 / 1e-59 AT1G36160 3698 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G146300 [exp] 966 / 0 AT5G35360 911 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Potri.006G078200 [exp] 962 / 0 AT5G35360 926 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Potri.005G213300 [exp] 424 / 1e-140 AT1G03090 1099 / 0.0 methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) Potri.005G169100 [exp] 222 / 2e-62 AT1G36160 3800 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Potri.002G092700 [exp] 216 / 3e-60 AT1G36160 3806 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Potri.010G023100 [exp] 48 / 2e-05 AT1G29900 1902 / 0.0 VENOSA 3, carbamoyl phosphate synthetase B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0105 [flax] [poplar] Hybrid PF02785 [flax] [poplar] Biotin_carb_C Biotin carboxylase C-terminal domain CL0179 [flax] [poplar] ATP-grasp PF02786 [flax] [poplar] CPSase_L_D2 Carbamoyl-phosphate synthase L chain, ATP binding domain CL0483 [flax] [poplar] PreATP-grasp PF00289 [flax] [poplar] Biotin_carb_N Biotin carboxylase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10017534 pacid=23163094 polypeptide=Lus10017534 locus=Lus10017534.g ID=Lus10017534.BGIv1.0 annot-version=v1.0 ATGGAGGCCACATTGCCGGGTTATAAATCGGTTACCTCCGTTCCTGGTTTATTTGCGAGAACAACACCAGGAATAAGAAGTTCACAATGTAGCCTTTTGG TGGGGACTAAGGTCAACTTTCCTAGACTAGGAGCTCATGCTGCTAATGTTGCTCATAAAACTAATAAGAGAGGTGGAGCGCTACGTGTAACATGCCATGC AGAAAAGATTCTGGTCGCGAACAGAGGGGAAATTGCTGTTCGTGTGATACGGACTGCCCACGAATTAGGAATACCATGTGTTGCTGTTTACTCAACCATC GACAAGGATGCCCTTCACGTCAAATTGGCTGATGAATCCGTTTGCATCGGTGAAGCGCCAAGCAATCAGTCGTACTTAGTGATAGCCAATGTGTTATCTG CTGCTGTCAGTCGCCAGTGTACAATGCTGCATCCTGGATATGGTTTTCTTGCTGAGAATGCCACATTTGTAGAAATGTGCCGAGCACACGGAATAAATTT TATTGGACCCAATCCAGATAGCATCAAAACTATGGGTGATAAAGCCACTGCCAGAGAAACAATGAAGAATGCAGGAGTTCCAACTGTTCCAGGAAGTGAT GGATTGTTGCAGAGCACAGAGGAAGCAATTAGGCTTGCTGAAGAAATAGGTTATCCTGTGATGATCAAGGCAACGGCTGGTGGTGGTGGGCGTGGAATGC GTCTTGCTAAAGAACCAGAGGAATTTGTGAAGTTGCTACAGCAAGCCAAGAGCGAGGCTGCTGCTGCATTTGGAAATGATGGAGTTTATTTAGAAAAATA CATTCAAAATCCAAGGCACATCGAGTTCCAGGTCCTTGCAGATAAGTATGGTAATGTCATCCATTTTGGGGAGAGAGACTGTAGTATCCAGAGACGTAAC CAGAAGCTTCTGGAAGAGGCTCCCTCTCCAGCATTGACCCCAGAGTTGAGGAAAGCCATGGGTGATGCAGCAGTTGCAGCAGCCGCATCGATAGGGTACA TTGGTGTCGGAACAGTGGAGTTCCTTCTGGATGAGAGGGGTTCCTTCTACTTCATGGAAATGAATACTCGTATCCAGGTTGAGCATCCTGTAACTGAAAT GATTTCATCTGTGGACTTGATTGAGGAACAAATTAGAGTAGCCATGGGAGAAAAACTTCGTTATAAACAGGAAGAAATTGTGCTCAGAGGTCATTCAATT GAGTGCCGAATCAATGCAGAGGATGCATTTAAGGGATTTAGACCGGGACCAGGAAGAATAACAGCATACTTGCCATCTGGAGGACCCTTTGTCAGAATGG ACAGTCATATTTATCCAGATTATGTTGTCCCTCCAAGCTATGATTCCCTGCTTGGAAAGCTTATAGTTTGGGCCCCGACTAGAGAAAAGGCGATTGAGCG TATGAAGAGGGCCCTTGATGACACTATTATTACGGGAGTTCCTACAACAATTGATTATCATAAGTTGATCCTTGACATTGAGGACTTCAAAACTGGAAAC GTCGATACAGCATTCATTCCAAAGCACGAAGATGAATTACAAGCGCCAACCCAGATAGTGCCAGCAAACGGGGTGGCCGCTTAA
AA sequence Show only first row Show all	>Lus10017534 pacid=23163094 polypeptide=Lus10017534 locus=Lus10017534.g ID=Lus10017534.BGIv1.0 annot-version=v1.0 MEATLPGYKSVTSVPGLFARTTPGIRSSQCSLLVGTKVNFPRLGAHAANVAHKTNKRGGALRVTCHAEKILVANRGEIAVRVIRTAHELGIPCVAVYSTI DKDALHVKLADESVCIGEAPSNQSYLVIANVLSAAVSRQCTMLHPGYGFLAENATFVEMCRAHGINFIGPNPDSIKTMGDKATARETMKNAGVPTVPGSD GLLQSTEEAIRLAEEIGYPVMIKATAGGGGRGMRLAKEPEEFVKLLQQAKSEAAAAFGNDGVYLEKYIQNPRHIEFQVLADKYGNVIHFGERDCSIQRRN QKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIRVAMGEKLRYKQEEIVLRGHSI ECRINAEDAFKGFRPGPGRITAYLPSGGPFVRMDSHIYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALDDTIITGVPTTIDYHKLILDIEDFKTGN VDTAFIPKHEDELQAPTQIVPANGVAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10017534 [exp]	0	1
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10042899 [exp]	1.0	0.9667
AT5G10160			Thioesterase superfamily prote...		Lus10015830 [exp]	3.7	0.9517
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Lus10034304 [exp]	4.9	0.9502
AT1G78900		VHA-A	vacuolar ATP synthase subunit ...		Lus10034836 [exp]	7.5	0.9386
AT5G10920			L-Aspartase-like family protei...		Lus10032846 [exp]	8.0	0.9466
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Lus10021040 [exp]	8.4	0.9322
AT1G10780			F-box/RNI-like superfamily pro...		Lus10001614 [exp]	8.5	0.9372
AT2G30200		EMB3147	EMBRYO DEFECTIVE 3147, catalyt...		Lus10026397 [exp]	10.5	0.9269
AT2G38040		CAC3	acetyl Co-enzyme a carboxylase...		Lus10021126 [exp]	11.2	0.9282
AT3G12870			unknown protein		Lus10031198 [exp]	11.6	0.9362

Compare expression of checked genes

Lus10017534 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.