Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23690 186 / 4e-60 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G64160 182 / 2e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT4G11190 162 / 1e-50 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT4G11210 161 / 3e-50 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT4G11180 140 / 4e-42 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G22900 77 / 2e-17 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G65870 70 / 9e-15 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G49040 69 / 2e-14 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G49030 71 / 3e-14 OVA2 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) AT5G42500 68 / 4e-14 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024715 [exp] 251 / 2e-85 AT4G23690 186 / 2e-60 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10024714 [exp] 248 / 3e-84 AT4G23690 186 / 3e-60 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10032331 [exp] 246 / 1e-83 AT4G23690 187 / 5e-61 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10017539 [exp] 176 / 6e-56 AT1G64160 238 / 9e-81 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10028749 [exp] 174 / 3e-55 AT1G64160 232 / 2e-78 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10028750 [exp] 94 / 6e-25 AT4G23690 52 / 3e-09 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025064 [exp] 82 / 1e-19 AT2G21100 197 / 9e-65 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034479 [exp] 81 / 3e-19 AT2G21100 189 / 9e-62 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034478 [exp] 79 / 6e-18 AT2G21100 191 / 1e-61 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G142702 [exp] 303 / 4e-106 AT4G23690 191 / 2e-62 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G097001 [exp] 303 / 4e-106 AT4G23690 191 / 2e-62 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.013G142602 [exp] 262 / 4e-90 AT1G64160 181 / 3e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G096800 [exp] 262 / 4e-90 AT1G64160 181 / 3e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G134600 [exp] 259 / 8e-89 AT1G64160 182 / 5e-59 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.013G142501 [exp] 258 / 2e-88 AT1G64160 179 / 1e-57 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G096680 [exp] 258 / 2e-88 AT1G64160 178 / 2e-57 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G134400 [exp] 252 / 3e-86 AT1G64160 184 / 1e-59 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G134800 [exp] 241 / 1e-81 AT1G64160 188 / 4e-61 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G096440 [exp] 182 / 4e-59 AT1G64160 119 / 1e-34 Disease resistance-responsive (dirigent-like protein) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0650 [flax] [poplar] AOC_barrel PF03018 [flax] [poplar] Dirigent Dirigent-like protein
Representative CDS sequence Show only first row Show all	>Lus10017538 pacid=23163131 polypeptide=Lus10017538 locus=Lus10017538.g ID=Lus10017538.BGIv1.0 annot-version=v1.0 ATGGACACCAAACCATCATCAACAACCCTGTTAGCTCTCTCATCATTCCTCCTCCTTTTCTTCCTCGCCAATTCTCAACCATCTCACGATCAACATCATA ACTACCCTCGAAAGCCACGACCGCAACGTCGTGCCATACCAAAGCCATGCAAGGAGCTAGTCTTCTACTTCCACGACATCATCTACAACGGCAAGAACTC GAGGAACGCCACCGCGGCCATCGTGGGGGCCCCTGCCTGGGGGAACAGGACCATCCTGGCCGGGCAGAACCACTTTGGTGACGTGGTCGTGTTCGACGAC CCGATAACGTTGGACAACAACTTGCACGCCCCGGCGGTGGGGCGCGCACAAGGGATGTATGTTTACGACAAGAAGGAAGTGTTCACGGCGTGGTTGGGGT TCTCGTTCGTGTTTAACTCGACGGAGCATGTGGGGACTCTGACGTTTGCCGGAGCTGATCCGCTGATGAACAAGACGAGGGATGTGTCGGTCGTCGGAGG CACCGGTGATTTCTTCATGGCTAGAGGGATTGCTACGTTGATGACGGATGCGTTCGAAGGTGAAGTTTATTTTAGGCTGAGGGTTGATATTAAGCTTTAT GAATGTTGGTGGTGA
AA sequence Show only first row Show all	>Lus10017538 pacid=23163131 polypeptide=Lus10017538 locus=Lus10017538.g ID=Lus10017538.BGIv1.0 annot-version=v1.0 MDTKPSSTTLLALSSFLLLFFLANSQPSHDQHHNYPRKPRPQRRAIPKPCKELVFYFHDIIYNGKNSRNATAAIVGAPAWGNRTILAGQNHFGDVVVFDD PITLDNNLHAPAVGRAQGMYVYDKKEVFTAWLGFSFVFNSTEHVGTLTFAGADPLMNKTRDVSVVGGTGDFFMARGIATLMTDAFEGEVYFRLRVDIKLY ECWW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23690			Disease resistance-responsive ...		Lus10017538 [exp]	0	1
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10005614 [exp]	1.0	0.8585
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10034614 [exp]	8.3	0.8534
AT3G50830		ATCOR413-PM2, C...	cold-regulated 413-plasma memb...		Lus10027946 [exp]	8.4	0.6885
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10017288 [exp]	8.6	0.8541
AT4G19420			Pectinacetylesterase family pr...		Lus10034767 [exp]	10.6	0.8032
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10004723 [exp]	13.6	0.7607
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10005413 [exp]	14.7	0.8431
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10032806 [exp]	16.1	0.8349
AT1G67750			Pectate lyase family protein (...		Lus10011400 [exp]	16.7	0.7763
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10004771 [exp]	18.0	0.8338

Compare expression of checked genes

Lus10017538 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.