Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64160 219 / 2e-73 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT4G23690 205 / 1e-67 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT4G11180 169 / 1e-53 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT4G11190 168 / 2e-53 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT4G11210 166 / 2e-52 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G22900 71 / 3e-15 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G42500 66 / 2e-13 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G42510 65 / 4e-13 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT2G21100 63 / 3e-12 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G58170 59 / 4e-11 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028749 [exp] 301 / 2e-105 AT1G64160 232 / 2e-78 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10017538 [exp] 176 / 4e-56 AT4G23690 187 / 2e-60 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10024715 [exp] 168 / 5e-53 AT4G23690 186 / 2e-60 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10032331 [exp] 166 / 3e-52 AT4G23690 187 / 5e-61 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10024714 [exp] 164 / 2e-51 AT4G23690 186 / 3e-60 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034482 [exp] 71 / 8e-15 AT2G21100 182 / 8e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025064 [exp] 68 / 3e-14 AT2G21100 197 / 9e-65 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034478 [exp] 68 / 8e-14 AT2G21100 191 / 1e-61 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10029306 [exp] 67 / 8e-14 AT1G65870 208 / 5e-69 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G142401 [exp] 232 / 2e-78 AT1G64160 223 / 3e-75 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G096560 [exp] 232 / 2e-78 AT1G64160 223 / 3e-75 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.013G142501 [exp] 176 / 2e-56 AT1G64160 179 / 1e-57 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G096680 [exp] 176 / 3e-56 AT1G64160 178 / 2e-57 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G134800 [exp] 174 / 2e-55 AT1G64160 188 / 4e-61 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.013G142602 [exp] 173 / 4e-55 AT1G64160 181 / 3e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G096800 [exp] 173 / 4e-55 AT1G64160 181 / 3e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G097001 [exp] 170 / 5e-54 AT4G23690 191 / 2e-62 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.013G142702 [exp] 170 / 5e-54 AT4G23690 191 / 2e-62 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G134400 [exp] 169 / 1e-53 AT1G64160 184 / 1e-59 Disease resistance-responsive (dirigent-like protein) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0650 [flax] [poplar] AOC_barrel PF03018 [flax] [poplar] Dirigent Dirigent-like protein
Representative CDS sequence Show only first row Show all	>Lus10017539 pacid=23163197 polypeptide=Lus10017539 locus=Lus10017539.g ID=Lus10017539.BGIv1.0 annot-version=v1.0 ATGAAGCATACTTCTTCCTTTCACTTTCTGTTAACCACAACCACCCTCATCTTCCTCCTCCTCCTCTCACTGATCTCTCCGGGCGATGCCACGTGGCGAA CGCCATCTCACCACCTGCAACATGCAAAACATCCGAAGCCATGCAAGCAGCTGGTCCTCTACTACCACGACATCCTCTTCCACGGGAACGGCGACCAAGG GAACGCCACGTCAGCAGCGGCCGCCAACGCCACCAAGCTGGGGGACTACAAGTTCGGGATGCTAGTGGTGTTCGACGACCCCGTGACGAAAGACGGGCAC CTCAAGTCGAAGGCGGTGGCGCGTGCACAAGGGTTCTACTTCTACGACATGAAGAGCACGTACAACGCGTGGTTCGCGTACACGCTGGTGTTCAACTCGA CGGACCACAAAGGGACCCTCAACATCATGGGAGCCGACATGATGTCGGAGGAGACCAGGGACCTCTCCGTCGTCGGGGGGACGGGGGATTTCTTCATGGC GCGTGGGATCGCTACTTTCCGTACGGACACTTTCCAGGGCGATGCCTACTTCCGGTTGGAGATGGATATTAAGTTGTATGAATGTTACTAG
AA sequence Show only first row Show all	>Lus10017539 pacid=23163197 polypeptide=Lus10017539 locus=Lus10017539.g ID=Lus10017539.BGIv1.0 annot-version=v1.0 MKHTSSFHFLLTTTTLIFLLLLSLISPGDATWRTPSHHLQHAKHPKPCKQLVLYYHDILFHGNGDQGNATSAAAANATKLGDYKFGMLVVFDDPVTKDGH LKSKAVARAQGFYFYDMKSTYNAWFAYTLVFNSTDHKGTLNIMGADMMSEETRDLSVVGGTGDFFMARGIATFRTDTFQGDAYFRLEMDIKLYECY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64160			Disease resistance-responsive ...		Lus10017539 [exp]	0	1
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10031350 [exp]	1.7	0.9149
AT5G18520			Lung seven transmembrane recep...		Lus10000821 [exp]	2.8	0.8632
AT3G45230			hydroxyproline-rich glycoprote...		Lus10022582 [exp]	4.7	0.8966
AT2G28780			unknown protein		Lus10024409 [exp]	6.6	0.8843
AT5G49690			UDP-Glycosyltransferase superf...		Lus10008955 [exp]	6.9	0.8728
AT1G49230			RING/U-box superfamily protein...		Lus10005818 [exp]	8.8	0.8859
AT3G45230			hydroxyproline-rich glycoprote...		Lus10021479 [exp]	9.2	0.8728
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Lus10017406 [exp]	11.8	0.8585
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10003143 [exp]	12.6	0.8804
AT5G58770			Undecaprenyl pyrophosphate syn...		Lus10036178 [exp]	13.3	0.8541

Compare expression of checked genes

Lus10017539 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.