Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41610 923 / 0 ATCHX18 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) AT4G23700 845 / 0 ATCHX17 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) AT3G17630 814 / 0 ATCHX19 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) AT1G64170 696 / 0 ATCHX16 cation/H+ exchanger 16, cation/H+ exchanger 16, cation/H+ exchanger 16 (.1) AT2G13620 638 / 0 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT3G53720 629 / 0 ATCHX20 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) AT1G05580 388 / 1e-121 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) AT2G31910 373 / 4e-116 ATCHX21 cation/H+ exchanger 21, cation/H+ exchanger 21, cation/H+ exchanger 21 (.1) AT1G06970 329 / 1e-99 ATCHX14, CHX14 cation/hydrogen exchanger 14 (.1) AT2G30240 297 / 9e-88 ATCHX13 CATION/H+ EXCHANGER 13, Cation/hydrogen exchanger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032332 [exp] 874 / 0 AT4G23700 1030 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10017541 [exp] 734 / 0 AT5G41610 800 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10030013 [exp] 642 / 0 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10035312 [exp] 639 / 0 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10025322 [exp] 564 / 0 AT3G53720 793 / 0.0 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) Lus10028748 [exp] 530 / 0 AT5G41610 517 / 1e-178 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10039138 [exp] 413 / 4e-130 AT2G13620 573 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10015268 [exp] 395 / 3e-123 AT2G13620 507 / 1e-166 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10040881 [exp] 389 / 2e-121 AT2G13620 572 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G142301 [exp] 1020 / 0 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.001G096320 [exp] 1018 / 0 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.003G134900 [exp] 936 / 0 AT5G41610 989 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.010G005200 [exp] 826 / 0 AT3G17630 1101 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.010G004800 [exp] 824 / 0 AT3G17630 1091 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.006G054700 [exp] 653 / 0 AT3G53720 982 / 0.0 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) Potri.007G105200 [exp] 624 / 0 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G111400 [exp] 433 / 1e-138 AT1G05580 645 / 0.0 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) Potri.004G131300 [exp] 427 / 1e-136 AT2G13620 640 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.019G123700 [exp] 403 / 1e-127 AT2G13620 536 / 4e-179 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10017540 pacid=23163134 polypeptide=Lus10017540 locus=Lus10017540.g ID=Lus10017540.BGIv1.0 annot-version=v1.0 ATGGCTGCTACAAACGTTACTTGCCCTCGTCCCATGGCGGCAACCTCGAATGGCTTGTTTCAAGGGGATAGTCCGTTGGAATTTGCTCTTCCTCTACTGA TTCTCCAGATCTGTCTCGTGGTTGTTCTCACTAGGGTTCTTGCTTTCCTTTTGAGGCCACTCAGGCAGCCTCGTGTGATTGCAGAGATAGTGGCAACTGA AATTTTCAAGTGCAAGGGAAAAGAGATTTCAATCTGGATTGAGATTGAATGGCGTATCATGAACAACCTTTCTGTTATAGCATATGATGACATGATGTAC AATTTATCTGTTGAACTAGTGCAAGTGGATGTTAAAGTTGACTTGGTAGCTTTGGTCAAATTGCAGGGAGGAGTTTTGCTAGGTCCTTCAGCACTAGGTA GAAACAAAGCTTACTTGCATGCTGTATTCCCTCCCAAGAGTATTCCAGTTCTGGATACTCTTGCAAACGTTGGTCTTCTCTACTTCCTGTTTCTCTCCGG ATTAGAGATTGATCCGAAAGCACTCCGCCGAACTGGAAAGAAAGCTATCGCTGTTGCATTTGCAGGAATAAGTCTCCCATTCCTAATGGGAATCGGTTCC TCATTTGTTCTTAGAGCAACCGTATCCAAAGGTGTAAACAGCACTGCCTTTCTTGTATACATGGGAGTGGCACTTTCAATCACAGCATTTCCCGTCTTGG CTCGAATTCTAGCCGAGTTAAAGCTCTTAACCACTGACCTTGGCAGAATGGCCATGTCAGCTGCTGCAGTTAACGATGTGGTTGCGTGGGTTCTTCTAGC TCTTGCTATTGCCATATCCGGGTCTGGAAAATCTCCCCTCATTTCGGTTTGGGTTCTGTTATGTGGCTGCGCATTTGTGGCTCTTTCGATACTGATTGTT CGTCCGATCTTTAAATGGATTGCTCGGAGATGCCAAGAAGGCGAGCCTGTTGAAGAATTATATGTATGTGGTACATTGGTTTCTGTTCTTGCAGCAGGGT TTCTTACCGATCTGATTGGAATTCATGCCATGTTCGGTGCTTTTGTTTTCGGAGTTCTTATTCCAAAGGAAGGTCCACTTGCAGGAGCTCTTGTCGAGAA GGTCGAAGACCTTGTCTCGAGTCTTTTCTTGCCGTTGTTCTTTGTGTCAAGTGGATTAAAAACCAATGTAGCCACCATCCAAGGTCTCCAGTCTTGGGGT CTTCTCTGCTTGGTGATTTGCACTGCGTGTTTCGGAAAGATTGCTGGCACGTTTTTGGTTTCACTTCTCTGTAAAATCCCGGTACGCGAATCGCTCGCTC TTGGGCTCCTTATGAACACAAAAGGCTTGGTGGAACTCATAGTTCTGAATATTGGGAAAGACAGGAAGGTTCTGAACGATCAGACATTCGCCATCATGGT GCTGATGGCTCTCTTCACAACATTCATCACCACACCTCTCGTGTTGGCTGTATATAAACCAGCAAGAAAATCACGACAGCCTGATTACAAGCACAGGACT ATCGAACGAAAAAACACAGACTCGCAGCTTCGGATTCTGGCCTGTTTCCACAGCACAAGAAACATACCATCAATGATAAACCTTCTCGAATCCTCGAGAG GAGTGCAGAAGGTCGAACGATTATGCGTATATGCTCTGCATCTCATGGAACTCTCCGAAAGATCCTCAGCGATCCTAATGGTTCACAAAGCCAGAAAAAA CGGGCTTCCTTTTTGGAACAAGGCCACGAATAGCAACCAAGTTGTTGTAGCATTCGAGGCCTTTCAGCAGCTGAGTAACGTTTCAGTTCGGCCGATGACT GCAATTTCCTCCATGACAGACATGCACGAGGATATATGCGCCACGGCAGAGAGAAAGAGGGCTGCGTTGATCATACTTCCGTTCCACAAACAGCAGAAGT TCGATGGAACCCTCGAAACTTCTCGATCCGAGCTCCGATGGGTTAACAAACGTGTACTTTCACATTCACCATGCTCGGTTGGAATCCTGGTTGATCGAGG GTTAGGCGGTACAAGTCAAGTGTCCGCGAGCAATGTATCATATCTAGTTAGAGTCCTCTTCTTTGGCGGACGGGACGATCGCGAGGCACTTGCGTACGGA CTAAGAATGGCGGAGCACCCCGGGATTAGTTTACAGGTGATTTGGTTTTTAGCGAAAGCTGAAGCATTGTCGGGGGAGATTGTCAGCGTTGACATGGCGG TTCAATCCACGATGAAATCGCTGTCGATGGATGAGGAGGTGCTTTCGGAACTGAAGGAGAAAGCTTCGAAAGACGAATCGGTGAAGTACGCGGAGAAAGT TGTGAAGAATGCGAGGGAGAGTGTGGATGCGATCCAAGAAGTGGCGCGGGACTGTAACTTGTTGCTGGTGGGTGGGAATCCAGAAGGGGACATTCGTTTG TTACTGGATCGACAAAATGAGTACGAGGAACTTGGTGTGGTGGGCGGATTGCTGACTTCTGATACTGCGGTTACAGCGTCGGTTTTGGTGATTCAGCAGT ATCATAATGGTCAGGTATCTTCTGAAGTGCTCAAACGTGATGATCATTCAGGGGAAGAAGGGTTGCGTGATGAGAAATCCTCATTAGAATCTAACTGA
AA sequence Show only first row Show all	>Lus10017540 pacid=23163134 polypeptide=Lus10017540 locus=Lus10017540.g ID=Lus10017540.BGIv1.0 annot-version=v1.0 MAATNVTCPRPMAATSNGLFQGDSPLEFALPLLILQICLVVVLTRVLAFLLRPLRQPRVIAEIVATEIFKCKGKEISIWIEIEWRIMNNLSVIAYDDMMY NLSVELVQVDVKVDLVALVKLQGGVLLGPSALGRNKAYLHAVFPPKSIPVLDTLANVGLLYFLFLSGLEIDPKALRRTGKKAIAVAFAGISLPFLMGIGS SFVLRATVSKGVNSTAFLVYMGVALSITAFPVLARILAELKLLTTDLGRMAMSAAAVNDVVAWVLLALAIAISGSGKSPLISVWVLLCGCAFVALSILIV RPIFKWIARRCQEGEPVEELYVCGTLVSVLAAGFLTDLIGIHAMFGAFVFGVLIPKEGPLAGALVEKVEDLVSSLFLPLFFVSSGLKTNVATIQGLQSWG LLCLVICTACFGKIAGTFLVSLLCKIPVRESLALGLLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMALFTTFITTPLVLAVYKPARKSRQPDYKHRT IERKNTDSQLRILACFHSTRNIPSMINLLESSRGVQKVERLCVYALHLMELSERSSAILMVHKARKNGLPFWNKATNSNQVVVAFEAFQQLSNVSVRPMT AISSMTDMHEDICATAERKRAALIILPFHKQQKFDGTLETSRSELRWVNKRVLSHSPCSVGILVDRGLGGTSQVSASNVSYLVRVLFFGGRDDREALAYG LRMAEHPGISLQVIWFLAKAEALSGEIVSVDMAVQSTMKSLSMDEEVLSELKEKASKDESVKYAEKVVKNARESVDAIQEVARDCNLLLVGGNPEGDIRL LLDRQNEYEELGVVGGLLTSDTAVTASVLVIQQYHNGQVSSEVLKRDDHSGEEGLRDEKSSLESN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41610		ATCHX18	cation/H+ exchanger 18, ARABID...		Lus10017540 [exp]	0	1
AT3G28480			Oxoglutarate/iron-dependent ox...		Lus10032183 [exp]	8.1	0.7986
AT1G05810		ARA, Ara-1, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10038226 [exp]	9.3	0.8489
AT1G53920		GLIP5	GDSL-motif lipase 5 (.1)		Lus10013185 [exp]	9.9	0.8360
AT4G00090			Transducin/WD40 repeat-like su...		Lus10030275 [exp]	11.3	0.8055
AT2G33580			Protein kinase superfamily pro...		Lus10042225 [exp]	13.0	0.7939
AT5G42200			RING/U-box superfamily protein...		Lus10005617 [exp]	14.5	0.8336
AT3G25882		NIMIN-2	NIM1-interacting 2 (.1)		Lus10041460 [exp]	15.9	0.7807
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10000453 [exp]	20.7	0.7899
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Lus10026262 [exp]	20.8	0.7851
AT5G43400			Uncharacterised conserved prot...		Lus10013399 [exp]	20.9	0.7852

Compare expression of checked genes

Lus10017540 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.