Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41610 755 / 0 ATCHX18 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) AT4G23700 737 / 0 ATCHX17 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) AT3G17630 694 / 0 ATCHX19 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) AT1G64170 615 / 0 ATCHX16 cation/H+ exchanger 16, cation/H+ exchanger 16, cation/H+ exchanger 16 (.1) AT2G13620 524 / 5e-172 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT3G53720 510 / 1e-166 ATCHX20 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) AT1G05580 339 / 9e-103 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) AT2G31910 324 / 2e-96 ATCHX21 cation/H+ exchanger 21, cation/H+ exchanger 21, cation/H+ exchanger 21 (.1) AT1G06970 268 / 3e-76 ATCHX14, CHX14 cation/hydrogen exchanger 14 (.1) AT2G30240 261 / 5e-74 ATCHX13 CATION/H+ EXCHANGER 13, Cation/hydrogen exchanger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032332 [exp] 972 / 0 AT4G23700 1030 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10028748 [exp] 871 / 0 AT5G41610 517 / 1e-178 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10017540 [exp] 765 / 0 AT5G41610 1013 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10024717 [exp] 550 / 0 AT4G23700 538 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10035312 [exp] 506 / 2e-164 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10030013 [exp] 503 / 1e-163 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10025322 [exp] 473 / 9e-153 AT3G53720 793 / 0.0 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) Lus10028747 [exp] 342 / 1e-110 AT4G23700 327 / 2e-107 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10015268 [exp] 328 / 3e-97 AT2G13620 507 / 1e-166 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G134900 [exp] 922 / 0 AT5G41610 989 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.001G096320 [exp] 800 / 0 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.013G142301 [exp] 799 / 0 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.010G005200 [exp] 716 / 0 AT3G17630 1101 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.010G004800 [exp] 715 / 0 AT3G17630 1091 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.006G054700 [exp] 528 / 3e-173 AT3G53720 982 / 0.0 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) Potri.007G105200 [exp] 506 / 3e-165 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G111400 [exp] 369 / 8e-113 AT1G05580 645 / 0.0 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) Potri.004G131300 [exp] 333 / 9e-100 AT2G13620 640 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.010G189100 [exp] 313 / 2e-92 AT2G13620 595 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10017541 pacid=23163199 polypeptide=Lus10017541 locus=Lus10017541.g ID=Lus10017541.BGIv1.0 annot-version=v1.0 ATGGCTCCTGGGAATGGGACATGTTATCCACCCATGAAAGCCACCTCCAATGGCGTCTTCCAGGGAGACAATCCACTCCACTATGCATTGCCGCTAGCGA TCCTCCAGATTTGCCTCGTCGTTGTCCTCACCCGTGCTCTTGCTTTCTTGCTCCGTCCTCTTCGCCAGCCTCGTGTGATTGCAGAGATCATTGGAGGAAT ATTGCTTGGTCCATCGGCTTTGGGAAGAAACCATTACTACCTCAACACCATTTTCCCACCAAAGAGTCTGACAGTCCTAGACACACTAGCCAACCTGGGA CTTTTATTCTTCTTGTTCCTAGTAGGACTGGAGTTGGACCCGAAGGCACTCAAAAGGACAGGCAACAAGGCTCTCAGTATCGCCGTTGCAGGGATCAGTC TCCCCTTCATCATGGGAATCGGAACCTCAGTTGTCCTCCGAGCAACAATTTCGAAAGGAGTAAGCGGCCCTCCGTTCCTAGTCTTCATGGGAGTCGCCCT ATCCATCACCGCCTTCCCAGTCCTCGCCAGAATTCTCGCAGAACTCAAGCTCCTGACCACCGAAGTTGGCCGGATGGCAATGTCGGCTGCGGCTGTGAAC GATGTCGCTGCATGGATCCTACTCGCCCTCGCCATTGCCCTCTCAGGAACAGGAAACTCGCCGTTAGTGGCTCTGTGGGTGCTCTTATGTGGATCCGGCT TTGTGTTGGGTTGTGTGTTCCTTATGCCTCCTGTATTTAAATGGATGGCTCAAAGATGCCCTGATGGCGAACCAGTGGATGAAATCTATGTCTGTGCTAC ACTGTGTGGTGTCTTGGCAGCAGGGTTCGTGACTGATACAATCGGAATCCACGCCCTTTTCGGAGCATTCATTGTCGGAATCCTTGTCCCTAAAGAAGGA GCATTTGCAGGTGCACTAGTTGAGAAGGTGGAAGATCTTGTTTCGGGTCTATTCCTTCCTTTATACTTCGTTTCGAGCGGATTGAAGACCAACGTAGCTA CAATCCAAGGAGCACAATCATGGGGACTCCTGGTTCTAGTCATAACCACAGCTTGTCTGGGAAAGATACTCGGCACTGTGGCTGTCTCCCTTCTTTGCAA AATGCCTTTGCAGGAAGCTTTAGCTATTGGATTCCTGATGAACACTAAAGGTTTAGTGGAGCTCATTGTTCTCAACATTGGCAGAGACAGAAAGGTCGGC CGGATGGCAGTGGCGGCGGCGGCTGTGAACGATGTAGCCGCATGGATCCTACTCGCCCTGGCCATTGCCCTCTCAGGAACAGGGAACTCGCCGTTTGTGG CTCTGTGGGTGCTTTTATGTGGATCCGGCTTTGTGTTGGGTTGTGTGTTCCTTATGCCTCCTGTATTTAAATGGATGGCTCAAAGATGCCCTGATGGCGA ACCAGTGGATGAAATCTATGTCTGTGCTACACTGTGTGGTGTCTTGGCAGCAGGGTTCGTGACTGATACAATCGGAATCCACGCCCTTTTCGGAGCATTC ATTGTCGGAATCCTTGTCCCTAAAGAAGGAGCATTTGCAGGTGCACTAGTTGAGAAGGTGGAAGATCTTGTTTCGGGTCTATTCCTTCCTTTATACTTCG TTTCGAGCGGATTGAAGACCAACGTAGCTACAATCCAAGGAGCACAATCATGGGGACTCCTGGTTCTAGTCATAACCACAGCTTGTGTGGGAAAGATACT CGGCACTGTGGCTGTCTCCCTTCTTTGCAAAATGCCTTTGCAGGAAGCTTTAGCTATTGGATTCCTGATGAACACTAAAGGGTTAGTGGAGCTCATTGTT CTCAACATTGGCAGAGACAGAAAGGTTCTGAACGAGCAAACATTCTCAATCCTAGTTCTAATGGCGATATTCACGACATTCATGACAACTCCACTAGTAA TGGCGGTTTACAAACCTGCAAAGCGAGAATCCAAGACAGAGTACAAGCACAGAACAATCGAGAGGAAGGATCCAAACGACCAATTCAGACTGTTGGCATG CTTCCACTCTTCAAGGAACATACCTGGATTGATCAATCTGATCGAAGCCTCCCGGGGAACCGAGAAGAGGCAAGGTCTCTGCGTCTACGCCTTGCATCTA ATGGAGCTCTCGGAGCGTCCTTCAGCGATCCTCATGGTCCACAAGGCCAGGAAGAACGGACTCCCTTTCTGGAACAAGATCCAGCAATCCGATTCGAATC AGGTCGTCGTAGCATTCGAGGCGTTCAGGCAGCTCAGCCGCGTGGTGATCCGGCCGATGACGGCGATCTCCGCGATCCACGGGACTCACGAGGACATCTG CGAGAGCGCGGAGAGGAAACGTGCGGCGATGATCATCTTACCCTTTCATAAGCACCAGCGGCTCGACGGATCCCTAGAGACGACCCGAACCGAGTTCCGC CACGTGAACAAGAAAGTCCTGGAGCGGGCGCCGTGCTCCGTTGCGATTCTGGTGGATCGGGGCTTCGGCGGGTCGACCCACGTGGCGGCCAGCAATGTTT CGTCGAGCATCACCGTGCTCTTCTTCGGCGGGAAAGATGACAGGGAGGCGTTAGCCTATGGGTCGAGAATGGCGGAGCATCCGGGAATTAGCCTGACGGT GATCCGATACGTGGCGAGCCCTGAAAATACTGGAGATATCGTGACCGTCGATTTGAACGACGGAGGATCCGACGGGGTGACTGGACTTTCCGATGACGAG TATTTAGCGGAGTTTAGGAAGAGGATTAAAGAAGACAGCTCGATTCATTACGAGGAGAGAGTGGTGAAGAATCCGGTGGAGACGACGGAGTCGATTCGAG GGTTCAGTAAGAGTAATTTGTTCCTGGTGGGGAGGATGCCGGAAGGTCCGGTGGCGGCGTGCCTGGGGGCGAAGATTGAGTGCGCCGAGCTTGGTCCGGT GGGGAATTTCTTGACGTCGATAGACTTTGTGACTTCGGCATCGGTGTTGGTGGTGAAGCAGTACTCTACGCCGTCGACGCCGCGGCACAGCACTATGAGC TCCGGGAAAGTGGCGGAATTGCCGGGAAGAGATTCGGAATCTCCGAAAATGGAGGCCTGA
AA sequence Show only first row Show all	>Lus10017541 pacid=23163199 polypeptide=Lus10017541 locus=Lus10017541.g ID=Lus10017541.BGIv1.0 annot-version=v1.0 MAPGNGTCYPPMKATSNGVFQGDNPLHYALPLAILQICLVVVLTRALAFLLRPLRQPRVIAEIIGGILLGPSALGRNHYYLNTIFPPKSLTVLDTLANLG LLFFLFLVGLELDPKALKRTGNKALSIAVAGISLPFIMGIGTSVVLRATISKGVSGPPFLVFMGVALSITAFPVLARILAELKLLTTEVGRMAMSAAAVN DVAAWILLALAIALSGTGNSPLVALWVLLCGSGFVLGCVFLMPPVFKWMAQRCPDGEPVDEIYVCATLCGVLAAGFVTDTIGIHALFGAFIVGILVPKEG AFAGALVEKVEDLVSGLFLPLYFVSSGLKTNVATIQGAQSWGLLVLVITTACLGKILGTVAVSLLCKMPLQEALAIGFLMNTKGLVELIVLNIGRDRKVG RMAVAAAAVNDVAAWILLALAIALSGTGNSPFVALWVLLCGSGFVLGCVFLMPPVFKWMAQRCPDGEPVDEIYVCATLCGVLAAGFVTDTIGIHALFGAF IVGILVPKEGAFAGALVEKVEDLVSGLFLPLYFVSSGLKTNVATIQGAQSWGLLVLVITTACVGKILGTVAVSLLCKMPLQEALAIGFLMNTKGLVELIV LNIGRDRKVLNEQTFSILVLMAIFTTFMTTPLVMAVYKPAKRESKTEYKHRTIERKDPNDQFRLLACFHSSRNIPGLINLIEASRGTEKRQGLCVYALHL MELSERPSAILMVHKARKNGLPFWNKIQQSDSNQVVVAFEAFRQLSRVVIRPMTAISAIHGTHEDICESAERKRAAMIILPFHKHQRLDGSLETTRTEFR HVNKKVLERAPCSVAILVDRGFGGSTHVAASNVSSSITVLFFGGKDDREALAYGSRMAEHPGISLTVIRYVASPENTGDIVTVDLNDGGSDGVTGLSDDE YLAEFRKRIKEDSSIHYEERVVKNPVETTESIRGFSKSNLFLVGRMPEGPVAACLGAKIECAELGPVGNFLTSIDFVTSASVLVVKQYSTPSTPRHSTMS SGKVAELPGRDSESPKMEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41610		ATCHX18	cation/H+ exchanger 18, ARABID...		Lus10017541 [exp]	0	1
					Lus10012012 [exp]	1.4	0.8674
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Lus10026767 [exp]	4.5	0.8145
AT4G26240			unknown protein		Lus10012919 [exp]	6.0	0.7942
AT1G18140		LAC1, ATLAC1	laccase 1 (.1)		Lus10009827 [exp]	7.7	0.8019
AT3G10490	NAC	ANAC051, ANAC05...	Arabidopsis NAC domain contain...		Lus10038670 [exp]	10.7	0.7996
					Lus10038255 [exp]	11.3	0.7800
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10037934 [exp]	12.2	0.8129
AT5G52390			PAR1 protein (.1)		Lus10040702 [exp]	12.5	0.7327
AT5G22290	NAC	FSQ6, FAN, ANAC...	fructose-sensing quantitative ...		Lus10034183 [exp]	14.0	0.7515
AT4G11560			bromo-adjacent homology (BAH) ...		Lus10008492 [exp]	15.4	0.7936

Compare expression of checked genes

Lus10017541 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.