Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22400 499 / 3e-174 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22360 496 / 3e-173 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22340 488 / 1e-169 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22380 478 / 9e-166 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22370 464 / 9e-161 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G78270 455 / 6e-157 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT2G36970 246 / 1e-75 UDP-Glycosyltransferase superfamily protein (.1) AT5G59590 244 / 2e-75 UGT76E2 UDP-glucosyl transferase 76E2 (.1) AT3G46670 244 / 3e-75 UGT76E11 UDP-glucosyl transferase 76E11 (.1) AT2G28080 237 / 3e-72 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010665 [exp] 754 / 0 AT1G22400 516 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10007421 [exp] 688 / 0 AT1G22400 529 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10019364 [exp] 680 / 0 AT1G22400 523 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013652 [exp] 535 / 0 AT1G22360 359 / 3e-121 UDP-glucosyl transferase 85A2 (.1.2) Lus10031388 [exp] 511 / 1e-178 AT1G22400 644 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10024583 [exp] 484 / 4e-168 AT1G22380 598 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10024584 [exp] 474 / 3e-164 AT1G22400 570 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10032220 [exp] 473 / 7e-164 AT1G22380 601 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10032218 [exp] 464 / 3e-160 AT1G22380 564 / 0.0 UDP-glucosyl transferase 85A3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G021000 [exp] 573 / 0 AT1G22360 561 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.006G023151 [exp] 559 / 0 AT1G22400 521 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G021100 [exp] 555 / 0 AT1G22360 505 / 5e-177 UDP-glucosyl transferase 85A2 (.1.2) Potri.006G022300 [exp] 550 / 0 AT1G22360 518 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.006G023101 [exp] 549 / 0 AT1G22360 516 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.006G022500 [exp] 548 / 0 AT1G22400 514 / 3e-180 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.006G022600 [exp] 546 / 0 AT1G22400 515 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G021500 [exp] 546 / 0 AT1G22360 501 / 3e-175 UDP-glucosyl transferase 85A2 (.1.2) Potri.016G022000 [exp] 543 / 0 AT1G22360 499 / 1e-174 UDP-glucosyl transferase 85A2 (.1.2) Potri.016G022400 [exp] 537 / 0 AT1G22360 495 / 4e-173 UDP-glucosyl transferase 85A2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10017542 pacid=23163162 polypeptide=Lus10017542 locus=Lus10017542.g ID=Lus10017542.BGIv1.0 annot-version=v1.0 ATGGGCTCTACTAACGATACAAAAACGGTTACACCACTACCGAACCACCGCCCACATGCAGTCTGCGTCCCGTTCCCGGCGCAGAGCCACATCAAGGCCA CCCTCAAGTTCGCCAAGCTACTCCGCGAGAGAGGATTCAGCATCACTTTCGTCAACACGGAGTTCAACCACAAGCGCTTCGTCACCACCAAGGGGCCCCA CGCCCTCGACGGCGAGCCGGACTTCCGGTTCACCACCATCCCCGACGGCCTCCCGCTGTCGGACCCGGGAGCCACGCAGAGCGTGTCTGCTATGTGTGGC TCCGCGATGAGGTTCATGGTGGGACCCTTCAGGGAGCTTGTCCACAGGCTGAACGATCCTGATGTTATGTCCGAGAACGGGTGGCCTCCGGTGAGCTGTG TTATTGCCGACGGGATGATGCCGTTCCCGTTGGTGGTGGCAAAGGAGATCGGAGTGCCGTCGTTGAGCTACTGGACTTTTCCGGCTTGTGCTTTCATGGG GTTTAAGCAGTATCGCTCTCTCTATGACCAAGGCATTACTCCCTTCAAAGACGAAAGCTTCAGGACAAATGGAGATCTGGAAACACCCATACAAGTTCCA GGAATGAAGAACATGCGTCTACGCGATCTCCCAGACTTCTTTCAAACAACAGACCCCAACGAGCCCCTTTTACAGAACCTAATCACAGGCACCGACGCCG TCGACATCGCTTCCGCACTCGTCATCCACACATACGACGCTTTCGAAGCCGACGTCCTCGCAGCCATAAACGACCTGTACCCTGGCCGCGTCTACACAAT CGGCCCAATGCAACACCTCCTCAATCAAATCAAACAATCAACCAAGCTAGGCCTCGACGACTCGATCGGCTACAGCTTATGGGAGGAAGAGCCGGAGTGC CTCCGCTGGCTCGACTCCAAACCCCCAAACTCCGTCATCTACGTCAATTTCGGAAGCATCGCCGTCATGTCCAAACAGCACCTGGTCGAATTCGGGATGG GATTGGTCAACAGTGAGGTTCCCTTCGTCTGGGTGATCCGGCCCGACCTTGTCATCGGCGAATCGACTTCTTTCCCGCCGGAATTTTCGGAGAAGGCGGC AAAATTAGGGTTTATCTCTGGGTGGTGTCCGCAGGAGGAAGTGCTGAATCATTCGGCGGTGGGTGGGTTTTTAACGCATTGCGGGTGGGGTTCGATCATC GAGACGGTGACGGCCGGGGTTCCGGTGCTGTGCTGGCCGTTCTTTGCTGACCAGCCGACCAATTGCAAGTTCTCGGTTATGGATTGGGAGATTGGAATGG AGATCGGGAATGATGTGAAGAGGGAGGAAGTGGAGGGACTAGTGAGGGAGCTGATGAGTGGAAAGAAAGGGGACAAAATGAGGAACAAGGCTATGGATTG GGCCAGATTGGCCCGGGAATCTACAGGGCCTGGTGGGTCGTCCACGGTCGGGCTGGACCGATTGGTTAATGAAGTCCTTCTCAAGAAACCACTGGTTGGG ATTTAG
AA sequence Show only first row Show all	>Lus10017542 pacid=23163162 polypeptide=Lus10017542 locus=Lus10017542.g ID=Lus10017542.BGIv1.0 annot-version=v1.0 MGSTNDTKTVTPLPNHRPHAVCVPFPAQSHIKATLKFAKLLRERGFSITFVNTEFNHKRFVTTKGPHALDGEPDFRFTTIPDGLPLSDPGATQSVSAMCG SAMRFMVGPFRELVHRLNDPDVMSENGWPPVSCVIADGMMPFPLVVAKEIGVPSLSYWTFPACAFMGFKQYRSLYDQGITPFKDESFRTNGDLETPIQVP GMKNMRLRDLPDFFQTTDPNEPLLQNLITGTDAVDIASALVIHTYDAFEADVLAAINDLYPGRVYTIGPMQHLLNQIKQSTKLGLDDSIGYSLWEEEPEC LRWLDSKPPNSVIYVNFGSIAVMSKQHLVEFGMGLVNSEVPFVWVIRPDLVIGESTSFPPEFSEKAAKLGFISGWCPQEEVLNHSAVGGFLTHCGWGSII ETVTAGVPVLCWPFFADQPTNCKFSVMDWEIGMEIGNDVKREEVEGLVRELMSGKKGDKMRNKAMDWARLARESTGPGGSSTVGLDRLVNEVLLKKPLVG I

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10017542 [exp]	0	1
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Lus10031883 [exp]	7.3	0.7904
					Lus10018997 [exp]	12.3	0.8308
AT1G67850			Protein of unknown function (D...		Lus10035229 [exp]	16.7	0.8094
					Lus10033847 [exp]	21.2	0.8238
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10043167 [exp]	22.4	0.8127
AT4G37250			Leucine-rich repeat protein ki...		Lus10010263 [exp]	22.8	0.7910
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10007633 [exp]	24.2	0.7762
AT5G40270			HD domain-containing metal-dep...		Lus10013004 [exp]	28.6	0.7490
AT5G53020			Ribonuclease P protein subunit...		Lus10018117 [exp]	31.5	0.7526
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Lus10031849 [exp]	39.2	0.7532

Compare expression of checked genes

Lus10017542 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.