Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41620 467 / 8e-157 unknown protein AT1G64180 368 / 7e-119 intracellular protein transport protein USO1-related (.1) AT2G46250 176 / 5e-48 myosin heavy chain-related (.1) AT3G11590 177 / 2e-47 unknown protein AT1G50660 118 / 2e-27 unknown protein AT5G22310 94 / 5e-20 unknown protein AT1G11690 51 / 1e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028746 [exp] 982 / 0 AT5G41620 497 / 4e-170 unknown protein Lus10003027 [exp] 207 / 1e-58 AT5G41620 203 / 5e-58 unknown protein Lus10021324 [exp] 171 / 1e-44 AT3G11590 530 / 3e-180 unknown protein Lus10007858 [exp] 160 / 2e-43 AT5G41620 156 / 1e-42 unknown protein Lus10017001 [exp] 160 / 3e-41 AT3G11590 587 / 0.0 unknown protein Lus10013311 [exp] 145 / 2e-36 AT3G11590 332 / 1e-105 unknown protein Lus10013312 [exp] 144 / 2e-36 AT3G11590 285 / 1e-88 unknown protein Lus10005200 [exp] 144 / 4e-36 AT3G11590 322 / 1e-101 unknown protein Lus10040076 [exp] 133 / 3e-32 AT1G50660 756 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G135000 [exp] 712 / 0 AT5G41620 494 / 1e-167 unknown protein Potri.001G096200 [exp] 683 / 0 AT5G41620 523 / 6e-180 unknown protein Potri.014G093400 [exp] 429 / 1e-141 AT5G41620 347 / 8e-111 unknown protein Potri.002G166600 [exp] 419 / 9e-138 AT5G41620 345 / 6e-110 unknown protein Potri.004G199500 [exp] 177 / 2e-47 AT3G11590 399 / 6e-131 unknown protein Potri.016G074300 [exp] 174 / 3e-46 AT3G11590 560 / 0.0 unknown protein Potri.009G160900 [exp] 157 / 9e-41 AT3G11590 399 / 9e-132 unknown protein Potri.006G207800 [exp] 157 / 3e-40 AT3G11590 582 / 0.0 unknown protein Potri.011G090100 [exp] 124 / 3e-29 AT1G50660 689 / 0.0 unknown protein Potri.004G015800 [exp] 100 / 9e-22 AT1G50660 390 / 1e-126 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017543 pacid=23163217 polypeptide=Lus10017543 locus=Lus10017543.g ID=Lus10017543.BGIv1.0 annot-version=v1.0 ATGAAGAAGGAGATGAAAAGGGTAGAAAGAAAAGGGAAAGGCGGAGATGATGGGGCAGTGCCCTCTGCGGAAAAGAAGGAAACTTTGACGGAAAAGTTGC GCATTACCAAATCAGTGGGGCCCTCTCCTTCGTGTGCTTTCACTCCCGTTAGACTTTGGCTCTCCACTGAGAACCAGAAGAATCAGAAGAAGAAAAATTC CTCTGCTCTCCCCACCACCGCGCACTTTAGCAAGAGCCACCACCAGGAGCCTCTCACTCCTTCTTCTTCAGCGAGAAAGATTGCCGCTGCTTTCTGGGAG TTTCAGCATTACCAGCCCCTCTCTAAGATGCACAGAGGGGGAAATTTCACCAGCAATGGCGGCGGAGGCGGCGGAGGAGGGGGTGGTGATCCTAGGTTGC CGCGTCACCACCGCCCGCAAAATCGTCACCGTGGTTATAAGGACAAGAGTATCGACCTCTCCCACTTCTTCCCAGACCCTTCTCCCAGCTCTCTTGATCA GCCAGAAAGTGCAGGCAGTCTGAGGAGGCATATTGCAGCATCACTGATTCAGCATCATCGCTCCATCGAGAGAAGTAATCGTGCTCTACAGCCAGTCTCT CCTGCAAGTTATGGCAGTTCTTTGGAGATGGCTCCTTACAATCCTGCAATGACGCCAACCAGCTCAGTAGAATTCAAGGCAAGACTTGGAGGGGACTCCT CGAATTACAATCTCAAAACTTCTACTGAACTGTTAAAAGTGCTAAACAGAATATGGAGCTTGGAGGAACAGCACACATCTAACATGTCACTCATAAAGGC TCTAAGGACGGAGCTGGAAAGATCCCGCGCCAGGATTAAAGAGCTCCATCGCGACCAGCAGGCCGATCGGCGTGAAATGGATGAGTTGATGAAGCAAGTC GCCGAGGACAAACTAGTTCAGAAAGGCAAAGAACACGATCGGTTGCACGCTGCAGTCCAGTCGTTGAGGGACGAGCTGGACGACGAGAGGAAGTTGAGGA AGAGGTCCGAGAGCTTGCACAGGAAGTTAGCTCGAGACCTTTCCGACGTGAAATCTTCTTTCACTGAGGCGTTGAAAGAGGTGGAGAAGGAGAGGAGGTC GAGAATGGTGTTGGAAGATCTCTGCGACGAGTTTGCTAAAGGGATTAAAGAGTACGAACAGGAAGCTCATGTTTCAAAACAGAAACATTCCGACTGGATT GGAAAGGGTGATGGTGATCGTTTGATTCTCCATATATCGGAGTCATGGCTCGACGAGAGAATGCAGATGAGGCTTGATGAAGCTCAGCATGGTTTTCTGG ACAACAGTTCGATAGTGGACAAGCTAGGTTTCGAGATAGAGACGTTTCTCAAGGCTAGAAGAATGGCAGGCTCGAAAGGGGCTAGAACGATTCCTCCGAA GGAGAGGCGCAATTCAATGGAATCAGTCCCGTTTAATGAAGCTGTGACTGCTCCTCGAGATGTGGGAGATGAAGATGATTCGGTGGGAAGCGATTCGCAA TGTTTCGAGCTTGACAAACCGAAAAATGATCAGACCAATGTACATGAACATGAAGATGAAGTAGTGAAAACTAGTACTAGTGTATCAAAGAAGAAGCTCT CATTGTCTCGGGAAAGGGTTAAAAGCCGGAGTCCTTCGAGCTTGCAAGTGAGATTCGAGGAACATATGGTGAAGCCGATGCCATCATCGAATGTAGATAA GAAGCCAGAGATGGCTGACTTGGAGGAGAAGAAACCAATTGAGATGAGAACTAATGATGATGGCGATGAGCAGATCCTGCATTCGAACCCAAATTATGGA ATGGATAACTTGATCAGGAGTCACGTAGCGGCATCAGAAGCTGATGAGAATGCAGGGGGGGAGGCTTCTTGTAGCTACCCGTCACGAAGGACTGCTGCTG CTAGTCCGATTCGGCAGTGGATGGCGAAACTGACGAGCTCAGAAGTTGAGGTGGCGGAATTGTCGACCAAATTGCCTGCTGGATCGAAGGAGAACACATT GAAGGCGAAGCTTCTCGAGGCGAGATCCAAAGGGACACGGTCGCGGTTGAAGCTGTTCCGAGGTTCGTCCTAG
AA sequence Show only first row Show all	>Lus10017543 pacid=23163217 polypeptide=Lus10017543 locus=Lus10017543.g ID=Lus10017543.BGIv1.0 annot-version=v1.0 MKKEMKRVERKGKGGDDGAVPSAEKKETLTEKLRITKSVGPSPSCAFTPVRLWLSTENQKNQKKKNSSALPTTAHFSKSHHQEPLTPSSSARKIAAAFWE FQHYQPLSKMHRGGNFTSNGGGGGGGGGGDPRLPRHHRPQNRHRGYKDKSIDLSHFFPDPSPSSLDQPESAGSLRRHIAASLIQHHRSIERSNRALQPVS PASYGSSLEMAPYNPAMTPTSSVEFKARLGGDSSNYNLKTSTELLKVLNRIWSLEEQHTSNMSLIKALRTELERSRARIKELHRDQQADRREMDELMKQV AEDKLVQKGKEHDRLHAAVQSLRDELDDERKLRKRSESLHRKLARDLSDVKSSFTEALKEVEKERRSRMVLEDLCDEFAKGIKEYEQEAHVSKQKHSDWI GKGDGDRLILHISESWLDERMQMRLDEAQHGFLDNSSIVDKLGFEIETFLKARRMAGSKGARTIPPKERRNSMESVPFNEAVTAPRDVGDEDDSVGSDSQ CFELDKPKNDQTNVHEHEDEVVKTSTSVSKKKLSLSRERVKSRSPSSLQVRFEEHMVKPMPSSNVDKKPEMADLEEKKPIEMRTNDDGDEQILHSNPNYG MDNLIRSHVAASEADENAGGEASCSYPSRRTAAASPIRQWMAKLTSSEVEVAELSTKLPAGSKENTLKAKLLEARSKGTRSRLKLFRGSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41620			unknown protein		Lus10017543 [exp]	0	1
AT1G54460			TPX2 (targeting protein for Xk...		Lus10006563 [exp]	18.2	0.6776
AT1G19850	ARF	IAA24, ARF5, MP	MONOPTEROS, indole-3-acetic ac...		Lus10012421 [exp]	22.5	0.6862
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Lus10012075 [exp]	24.7	0.6667
AT4G36520			Chaperone DnaJ-domain superfam...		Lus10028322 [exp]	25.1	0.6737
AT4G34460		ELK4, AGB1, ATA...	ERECTA-LIKE 4, GTP binding pro...		Lus10040464 [exp]	29.1	0.6831
AT5G37930			Protein with RING/U-box and TR...		Lus10028535 [exp]	51.4	0.6572
AT1G31040			PLATZ transcription factor fam...		Lus10038365 [exp]	58.4	0.6622
AT1G30320			Remorin family protein (.1)		Lus10038521 [exp]	163.2	0.5483
AT5G66580			unknown protein		Lus10000739 [exp]	178.8	0.6302
AT5G04347			Plant self-incompatibility pro...		Lus10022824 [exp]	224.7	0.6028

Compare expression of checked genes

Lus10017543 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.