Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028745 [exp] 565 / 0 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G135200 [exp] 409 / 3e-143 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [flax] [poplar] NTN PF03417 [flax] [poplar] AAT Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase
Representative CDS sequence Show only first row Show all	>Lus10017544 pacid=23163177 polypeptide=Lus10017544 locus=Lus10017544.g ID=Lus10017544.BGIv1.0 annot-version=v1.0 ATGGAATCCAAAGGGTTGGAGCTCTTCGAAGTCGGACTTTGTGAAGATGGCTACCAGATGGGTTTCCTGATAGGCAAGAGGGTTGGCAATATGATCAAAA GCCGGTTGGCAACAAACCTTATTCTTCAGAATCAGCTTCTTCCTTTTGTTCAAACTCCACAAGGTCAGCAGCTTATCACCCAACTCTCTGAGAACAACAA AACCATGTTCCCTAGATATTGGGATGAGCTGCTGCGGACTGCTGCCGGTAGTGGAGTGTCTGTTCTTGATGTGATTTTGATCAATTTCAGGAAGGAGATT CTTCCTTTCCTTCCAAAGACAGTGTCAACGACCCCTTATTATGATGTCGATGCTCCAGATGACTGTTCTGATGAGAGCTTCCTAGCTGTGCATTCGGGTT CAATACTCAAGATTGAGGCGTTCACATTGAACTCAGTTCCTCCATCTGAACATGAAATTGTGAAAGGCGGAATTGGAAGGAACTTTGTCTGTAGAGATCT CCTGGAAGCTACAAGCATCACAGATACACTCAGAAGAATAAATTCCTATAAAGTTTCAGTAGGGCACTGCTACAATCTCGTTTACATGCCAGATCGGAAG ATAGTGAACGTCAAAACAGCCTCAAAGAAGCGGGTTTCGGTTCATGAGGTTGGATCAACACCGTTCTTCCTTGCAAACATGTATCTCCACCTTGAAGTTG ATCAGGTAGAAGATGACAACTCAAAAAGCAGGCAAGAAAGAGCTGGTGTTCTGCAGAGAAAATCAAAAGAAGATTTCCTGTCAATTCTAGGAGATACGGG AGACAAAAGATACCCCATTTACATGAATGGTCCAACTCTGTACACCCTATGCACAGCAATGATAGATCTGGATAAACAAACACTGTCAATTATCAAGGGG AATCCAAAGCAGGGAGAAATCTCCCATGTATTCTCCGTGTCTTCAGCAGATTTCAAGACTTTCCAATAA
AA sequence Show only first row Show all	>Lus10017544 pacid=23163177 polypeptide=Lus10017544 locus=Lus10017544.g ID=Lus10017544.BGIv1.0 annot-version=v1.0 MESKGLELFEVGLCEDGYQMGFLIGKRVGNMIKSRLATNLILQNQLLPFVQTPQGQQLITQLSENNKTMFPRYWDELLRTAAGSGVSVLDVILINFRKEI LPFLPKTVSTTPYYDVDAPDDCSDESFLAVHSGSILKIEAFTLNSVPPSEHEIVKGGIGRNFVCRDLLEATSITDTLRRINSYKVSVGHCYNLVYMPDRK IVNVKTASKKRVSVHEVGSTPFFLANMYLHLEVDQVEDDNSKSRQERAGVLQRKSKEDFLSILGDTGDKRYPIYMNGPTLYTLCTAMIDLDKQTLSIIKG NPKQGEISHVFSVSSADFKTFQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10017544 [exp]	0	1
					Lus10028745 [exp]	1.0	0.8806
AT4G04900		RIC10	ROP-interactive CRIB motif-con...		Lus10018362 [exp]	2.0	0.8256
AT4G39870			TLD-domain containing nucleola...		Lus10024053 [exp]	7.9	0.7596
AT4G17150			alpha/beta-Hydrolases superfam...		Lus10039125 [exp]	8.0	0.7703
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10004944 [exp]	9.5	0.7676
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10005443 [exp]	13.6	0.7638
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Lus10028357 [exp]	14.6	0.7909
AT2G26540		ATUROS, ATDUF3,...	ARABIDOPSIS THALIANA UROPORPHY...		Lus10032769 [exp]	23.6	0.7672
AT4G10360			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10034433 [exp]	25.1	0.7220
AT5G04360		ATPU1 ,ATLDA	PULLULANASE 1, limit dextrinas...		Lus10000060 [exp]	30.4	0.7291

Compare expression of checked genes

Lus10017544 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.