Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61600 786 / 0 ATPOB1 POZ/BTB containin G-protein 1 (.1.2) AT2G46260 762 / 0 BTB/POZ/Kelch-associated protein (.1) AT4G01160 530 / 0 BTB/POZ/Kelch-associated protein (.1) AT2G30600 54 / 2e-07 BTB/POZ domain-containing protein (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028744 [exp] 1007 / 0 AT3G61600 744 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Lus10032340 [exp] 961 / 0 AT3G61600 827 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Lus10024723 [exp] 888 / 0 AT3G61600 759 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Lus10016014 [exp] 46 / 0.0001 AT2G30600 1131 / 0.0 BTB/POZ domain-containing protein (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G166700 [exp] 816 / 0 AT3G61600 931 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Potri.014G093700 [exp] 810 / 0 AT3G61600 945 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Potri.003G135300 [exp] 797 / 0 AT3G61600 733 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Potri.001G096100 [exp] 773 / 0 AT3G61600 655 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Potri.001G468700 [exp] 46 / 5e-05 AT1G55760 522 / 0.0 BTB/POZ domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF07707 [flax] [poplar] BACK BTB And C-terminal Kelch CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Lus10017545 pacid=23163100 polypeptide=Lus10017545 locus=Lus10017545.g ID=Lus10017545.BGIv1.0 annot-version=v1.0 ATGAGAGAGCTTGGCGCGGACCTCTTCGAACCTCGAACGCTGATGGACTCCGATTTCTCCACGGCCAGGCCTGCCGGGTCCGCTGCGGATTCCGACTTTG GATTTGCCTTTAACGATCAGAATTTCTCCGATAGGGTCCTCAAGATAGAGATAATTGCCGATTTGCCCGACACCAAGTCTGAGGTTGAAGGCGCAATCAC CCTCGCCGAGTGGGCTCGCAACCGGAAGCGCCGGAGGGAGGAGATTAAGAAGGACATCGTGGCAGATGTTGGACAAAGCGCAGAGCAGGTGTTGAATTTG AATATCCCTGAAACAGAGGAAACTTTGGCTTATGATAACCAAGATGAAGAAGTTGTAGCCATGATTGAAGAATCTGCAGCGGATGGTGGATTGAACTTGA ATGAACAAGGTGATGAGCCCCCGACTGTCAGTGAATATGGATGGAGCATGGACTGCTCAACTGTGCTTAGAGTTAATACTATACATATTAGTTCACCAAT ATTAGCGGCAAAGAGCCCATTCTTTTACAAGTTGTTCTCCAATGGGATGAGAGAATTGGATCTAAGGCATGTAACTCTGCGGATACATGAATCTGAAGAA GCAGCCTTGATGGAACTTCTCAATTTTATGTATAGCAATACACTATCGGCAAACACTGCTACTGCTCTGCTGGATATATTGATGGCTGCCGACAAGTTTG AAGTCGTGTCATGTATGAGATATTGCAGTAGATTGCTTAGGAACTTGCCTATGACTAGTGAGTCAGCACTGCTCTACTTGGACCTTCCTTCTAACGTGTT ATTGGCTGAAGCTGTTCAGCCACTGACTGATGCCGCAAAGCAGTTTCTTGCTGGACGGTACAAGGACATGTCCAAGTTTCAAGAGGAGATTCTTAACTTG CCATTGGCTGGTATTGAGGCAGTACTATCCAGTGATGATCTCCACGTAGTTTCAGAGGATGCTGTGTATGATTTTGTTCTTAAGTGGGCTCGCACTCATT ACCCGAGAGTAGAGGAACGTCGAGAAGTACTTGCCACACGGTTTGTGCGACTAATCCGTTTCCCATTCATGTCAAGCCGGAAATTAAAGAAGGTTTTGAC ATGTAATGACTTCGATCATGATATTGCATCTAAAGTTGTTCTGGATGCACTCTTTTTCAAGAACGAGACGCCACATAGGCAGCGAGTTCTTGCAGCAGAA GAGGCTAGTGGGCCATCTCGCCGCCTTGTCGAGAGATCATTCAAGTACCGACCTGTTAAGGTGATGGAGTTTGAGCTTCCACGTCAGCAGTGTCTTGTGT ACCTGGACCTAAAACGAGACGAGTGTACACATTTATACCCATCTGGCCGAGTGTATTCACAGGCATTTCACCTCGGTGGCCAGGGTTTTTTCTTGTCTGC CCACTGTAATATGGACCAGCACAGCGCTTTCCACTGTTTTGGGCTGTTCCTGGGAATGCAGGAGAAAGGATCATTGAGCTTTGCTGTTGATTACGAGTTT GCAGCAAGGTCGAAGCCATCAGAAGAGTTTGCCAGCAAATACAAAGGAAACTACACTTTCACAGGAGGCAAGGCTGTTGGATACAGGAACCTGTTCGGTG TACCATGGACGGCATTCATGGCTGAAGATAGCCCGTATTTCATCAACGAAATCCTACATCTCAGGGCGGAGTTGACTATAGGGCAGTGA
AA sequence Show only first row Show all	>Lus10017545 pacid=23163100 polypeptide=Lus10017545 locus=Lus10017545.g ID=Lus10017545.BGIv1.0 annot-version=v1.0 MRELGADLFEPRTLMDSDFSTARPAGSAADSDFGFAFNDQNFSDRVLKIEIIADLPDTKSEVEGAITLAEWARNRKRRREEIKKDIVADVGQSAEQVLNL NIPETEETLAYDNQDEEVVAMIEESAADGGLNLNEQGDEPPTVSEYGWSMDCSTVLRVNTIHISSPILAAKSPFFYKLFSNGMRELDLRHVTLRIHESEE AALMELLNFMYSNTLSANTATALLDILMAADKFEVVSCMRYCSRLLRNLPMTSESALLYLDLPSNVLLAEAVQPLTDAAKQFLAGRYKDMSKFQEEILNL PLAGIEAVLSSDDLHVVSEDAVYDFVLKWARTHYPRVEERREVLATRFVRLIRFPFMSSRKLKKVLTCNDFDHDIASKVVLDALFFKNETPHRQRVLAAE EASGPSRRLVERSFKYRPVKVMEFELPRQQCLVYLDLKRDECTHLYPSGRVYSQAFHLGGQGFFLSAHCNMDQHSAFHCFGLFLGMQEKGSLSFAVDYEF AARSKPSEEFASKYKGNYTFTGGKAVGYRNLFGVPWTAFMAEDSPYFINEILHLRAELTIGQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Lus10017545 [exp]	0	1
AT1G03750		SWI2, SNF2, CHR...	CHROMATIN REMODELING 9, switch...		Lus10033669 [exp]	8.9	0.6927
AT3G49060			U-box domain-containing protei...		Lus10036362 [exp]	9.4	0.7388
					Lus10008146 [exp]	18.3	0.6677
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Lus10005184 [exp]	28.1	0.6880
AT5G23750			Remorin family protein (.1.2)		Lus10024514 [exp]	35.9	0.6636
AT4G13980	HSF	AT-HSFA5	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10016634 [exp]	37.0	0.6802
AT2G23470		RUS4	ROOT UV-B SENSITIVE 4, Protein...		Lus10022474 [exp]	39.6	0.6206
AT5G39450			F-box family protein (.1)		Lus10015691 [exp]	42.2	0.6602
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Lus10030730 [exp]	44.2	0.6835
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10031320 [exp]	45.7	0.6859

Compare expression of checked genes

Lus10017545 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.