Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23720 162 / 1e-47 Protein of unknown function (DUF1191) (.1) AT4G01140 129 / 4e-35 Protein of unknown function (DUF1191) (.1) AT3G08600 113 / 4e-29 Protein of unknown function (DUF1191) (.1) AT4G11950 64 / 2e-11 Protein of unknown function (DUF1191) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028743 [exp] 553 / 0 AT4G23720 178 / 6e-54 Protein of unknown function (DUF1191) (.1) Lus10007859 [exp] 102 / 5e-25 AT4G01140 115 / 9e-30 Protein of unknown function (DUF1191) (.1) Lus10003033 [exp] 74 / 1e-14 AT4G01140 89 / 6e-20 Protein of unknown function (DUF1191) (.1) Lus10001191 [exp] 74 / 1e-14 AT4G22900 224 / 2e-71 Protein of unknown function (DUF1191) (.1) Lus10006713 [exp] 71 / 1e-13 AT4G11950 181 / 2e-54 Protein of unknown function (DUF1191) (.1) Lus10014139 [exp] 70 / 1e-13 AT4G22900 169 / 1e-50 Protein of unknown function (DUF1191) (.1) Lus10024481 [exp] 68 / 6e-13 AT1G62981 158 / 7e-47 Protein of unknown function (DUF1191) (.1), Protein of unknown function (DUF1191) (.2) Lus10002998 [exp] 63 / 4e-11 AT4G11950 224 / 2e-71 Protein of unknown function (DUF1191) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G096000 [exp] 312 / 2e-106 AT4G23720 209 / 4e-66 Protein of unknown function (DUF1191) (.1) Potri.003G135400 [exp] 296 / 3e-100 AT4G23720 190 / 1e-58 Protein of unknown function (DUF1191) (.1) Potri.014G094000 [exp] 163 / 2e-48 AT4G01140 140 / 2e-39 Protein of unknown function (DUF1191) (.1) Potri.002G166900 [exp] 160 / 4e-47 AT4G01140 162 / 8e-48 Protein of unknown function (DUF1191) (.1) Potri.006G111700 [exp] 135 / 2e-37 AT3G08600 249 / 1e-81 Protein of unknown function (DUF1191) (.1) Potri.016G141100 [exp] 127 / 2e-34 AT3G08600 176 / 7e-53 Protein of unknown function (DUF1191) (.1) Potri.001G112800 [exp] 85 / 1e-18 AT1G62981 213 / 8e-67 Protein of unknown function (DUF1191) (.1), Protein of unknown function (DUF1191) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0661 [flax] [poplar] Gain PF06697 [flax] [poplar] DUF1191 Protein of unknown function (DUF1191)
Representative CDS sequence Show only first row Show all	>Lus10017546 pacid=23163132 polypeptide=Lus10017546 locus=Lus10017546.g ID=Lus10017546.BGIv1.0 annot-version=v1.0 ATGAGTTTGAATGTCATCTGGTTACTGATGAGTTTCTGTGTTTCAGCATCAGTAGATGGGTTAGCAGACAACTTCACTGCAGAATCTCTGGATGCTTTTC TCGAGGCTTCAGCTTTCCAGACTGTGGTCCAGTACCGGCGCCATACTGGTGCTCTATATCAAGCTCTGCTCCCTTCCAATTTATCAGGTATGCAGGTCTC GGTTGTAAGACTGAGGAGCAAGAGGCTCTGGAACATTGGTGCCAACTTCACTTTCTTCCAGATTCCACCGAGAACCATGACGACCCCTCACGTGAAGAGA CTAGCGATTGTTTACCAGGACTTGGGGAATCGGTCGCCTGAATATTACTCCGTTCCAGGATACTCATTGCTCGCTCCTGTAGTTGGATTCCAGGTGTTTG ATGTTTCAAACATCAGTGCCAAAAGCATGATTAGAAATATCAGCCTTGATACAGGAGGAAACCCTGTTGTCGTGCGCTTCCTTCCTCGTCAAGGTTCGAG AATCGAGAATAGCTCGAGAGCGCAATGCATTGTTTTTGGAACCGATGGGAGCTTTAACCTCAGCGATGTCATAGGCCGGTCGAACATGACTTGTTATGCT CACGATCAAGGCCACTTCTTCTCTGTTGTGGTTCCAGTGGTGAGGAATATTGATGACAGGTTTGAGCACAGGAGGAAGGAGAAGAAGCCCTGGTTTCTGT GGATGGTGCTGCTGGGAACTGTGGTTGGATTAGGGGGGTTGACTCTACTGGTATTCCTTGGCTTGATGTCGAAGAACCTTCTGAAGACGAAGAAGATTCA GGTGATGGAAAGACAGGCTGATGAAGATTTGGTTCTTGAAACCACATGGATAAGGAATAGCAAAATGCCCTGTGCAGATGTTACAAGAACTCAGCCTACC ATTGAAACTGGTGATTTTCCATAG
AA sequence Show only first row Show all	>Lus10017546 pacid=23163132 polypeptide=Lus10017546 locus=Lus10017546.g ID=Lus10017546.BGIv1.0 annot-version=v1.0 MSLNVIWLLMSFCVSASVDGLADNFTAESLDAFLEASAFQTVVQYRRHTGALYQALLPSNLSGMQVSVVRLRSKRLWNIGANFTFFQIPPRTMTTPHVKR LAIVYQDLGNRSPEYYSVPGYSLLAPVVGFQVFDVSNISAKSMIRNISLDTGGNPVVVRFLPRQGSRIENSSRAQCIVFGTDGSFNLSDVIGRSNMTCYA HDQGHFFSVVVPVVRNIDDRFEHRRKEKKPWFLWMVLLGTVVGLGGLTLLVFLGLMSKNLLKTKKIQVMERQADEDLVLETTWIRNSKMPCADVTRTQPT IETGDFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23720			Protein of unknown function (D...		Lus10017546 [exp]	0	1
AT4G23720			Protein of unknown function (D...		Lus10028743 [exp]	3.9	0.7701
AT3G54260		TBL36	TRICHOME BIREFRINGENCE-LIKE 36...		Lus10026066 [exp]	4.7	0.8228
AT1G69160			unknown protein		Lus10019172 [exp]	8.6	0.7832
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Lus10040801 [exp]	13.1	0.7695
AT5G39380			Plant calmodulin-binding prote...		Lus10030701 [exp]	15.4	0.7333
AT1G69080			Adenine nucleotide alpha hydro...		Lus10036814 [exp]	21.9	0.7134
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Lus10016533 [exp]	24.5	0.7269
AT2G40480			Plant protein of unknown funct...		Lus10034211 [exp]	25.5	0.7542
AT3G13980			unknown protein		Lus10015641 [exp]	33.7	0.7198
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10018674 [exp]	37.5	0.7097

Compare expression of checked genes

Lus10017546 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.