Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01420 211 / 4e-65 Glutaredoxin family protein (.1) AT5G06470 189 / 1e-58 Glutaredoxin family protein (.1) AT3G11773 149 / 5e-44 Thioredoxin superfamily protein (.1.2) AT5G03870 154 / 2e-43 Glutaredoxin family protein (.1) AT4G10630 146 / 7e-41 Glutaredoxin family protein (.1) AT3G57070 137 / 6e-37 Glutaredoxin family protein (.1) AT1G64500 132 / 3e-35 Glutaredoxin family protein (.1) AT5G39865 127 / 2e-33 Glutaredoxin family protein (.1) AT3G28850 125 / 2e-32 Glutaredoxin family protein (.1) AT5G13810 122 / 2e-32 Glutaredoxin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028742 [exp] 552 / 0 AT5G01420 221 / 6e-69 Glutaredoxin family protein (.1) Lus10021255 [exp] 181 / 1e-55 AT5G06470 185 / 7e-59 Glutaredoxin family protein (.1) Lus10013597 [exp] 178 / 1e-54 AT5G06470 179 / 2e-56 Glutaredoxin family protein (.1) Lus10017029 [exp] 156 / 9e-44 AT5G03870 296 / 3e-97 Glutaredoxin family protein (.1) Lus10021353 [exp] 155 / 3e-43 AT5G03870 296 / 3e-97 Glutaredoxin family protein (.1) Lus10008270 [exp] 135 / 1e-36 AT4G10630 305 / 7e-103 Glutaredoxin family protein (.1) Lus10003194 [exp] 132 / 3e-35 AT1G64500 322 / 3e-108 Glutaredoxin family protein (.1) Lus10033238 [exp] 131 / 4e-35 AT4G10630 297 / 1e-99 Glutaredoxin family protein (.1) Lus10001669 [exp] 125 / 6e-33 AT5G39865 340 / 1e-115 Glutaredoxin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G243700 [exp] 291 / 2e-96 AT5G01420 213 / 3e-65 Glutaredoxin family protein (.1) Potri.008G016100 [exp] 275 / 5e-90 AT5G01420 209 / 2e-63 Glutaredoxin family protein (.1) Potri.006G201300 [exp] 198 / 2e-61 AT5G06470 213 / 1e-68 Glutaredoxin family protein (.1) Potri.016G067700 [exp] 197 / 6e-61 AT5G06470 206 / 4e-66 Glutaredoxin family protein (.1) Potri.006G212700 [exp] 166 / 1e-47 AT5G03870 332 / 2e-111 Glutaredoxin family protein (.1) Potri.016G079400 [exp] 159 / 6e-45 AT5G03870 301 / 2e-99 Glutaredoxin family protein (.1) Potri.003G141800 [exp] 151 / 1e-42 AT1G64500 315 / 8e-106 Glutaredoxin family protein (.1) Potri.006G041800 [exp] 139 / 2e-37 AT3G57070 340 / 3e-114 Glutaredoxin family protein (.1) Potri.001G448300 [exp] 137 / 2e-37 AT4G10630 285 / 6e-95 Glutaredoxin family protein (.1) Potri.016G038600 [exp] 132 / 7e-35 AT3G57070 317 / 5e-105 Glutaredoxin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10017547 pacid=23163129 polypeptide=Lus10017547 locus=Lus10017547.g ID=Lus10017547.BGIv1.0 annot-version=v1.0 ATGAAGGGAATGAAAGGGAAACTCCTCAAGAAGCTCAACTCCATCAAACCGGTCGCGCAGTTGAAGCAGCCCGCCCTCGTCCTTCAGCCGATTTCAGTTC ACCACTTCCAACCAGTTTCCGAAAATCAGCCGGCCAAACCTCCGATCCAGACTCAGTCCACCACCAAGGAGAGGAGCGAGGACGCATTTTTCAAATTGGA TCTCGATAGTTGCGATGGCGATTTTGCTGATGATAAAGAGAATTTGGGACAGCCGCCGGTGAAGGCTCTGTTTCCGTCCGGCGACGGCGGCGGTAGAGAA GGGAATCTTATGGAGCAGACGCCTCTGTCGGAGATTGACATCTCGCCTTTCCGGCGGCCGGACTTCGATTCCGTCACCCTTTTCGATCCAAATCTGTTGG CAGCATTCGAGAAGGCGCTGTCGGAGTACACACGGTGGATCGACGAAGAAAGGAGAGCCCGGAAACTGAGTGCTAAACAAACAGACGAAGACCAAGGAGG AGAGAAAAAGGAAGAGCCTTTGCTCGAACCCGAAGACGAAACCGAAACCAATCCGTTACTCGGGTTCGAAGACAAATGCCCGCCGGGCGGAACCGACACG GTGATTCTGTACACGACAACACTCAGAGGAATTAGAAAAACCTTCGAGGATTGCAGCGGGGTTCGGTTTCTCTTACAGAGTCTTCGGATTCGTTACCACG AGAGGGACGTGTCGATGCACATGGAGTACAGGGAAGAGCTGTGGCGAGTGTTGGGCGGGAAGATTATGCCGCCTCGGCTTTTCGTCAAGGGGAAGTACAT CGGCGGAGCAGAGGAAGTGTTGGGTTTGAATGAGCAGGGGAAGTTTAGACCTCTGTTTGCAGGGATTCCAGCTGGTGATAGTTTAATGGAGCCTTGTGAA GCCTGCAACGGAGTTTGTTTCGTGCTCTGTTTCAATTGCAGTGGTAGCCATCGGATCTTAACCGGAGATGATGATTGGTCGTGGAGCGAATGTCTGGATT GCAATGAGAATGGTTTGATTGTCTGTCGCCATTGCTGCTGCTGA
AA sequence Show only first row Show all	>Lus10017547 pacid=23163129 polypeptide=Lus10017547 locus=Lus10017547.g ID=Lus10017547.BGIv1.0 annot-version=v1.0 MKGMKGKLLKKLNSIKPVAQLKQPALVLQPISVHHFQPVSENQPAKPPIQTQSTTKERSEDAFFKLDLDSCDGDFADDKENLGQPPVKALFPSGDGGGRE GNLMEQTPLSEIDISPFRRPDFDSVTLFDPNLLAAFEKALSEYTRWIDEERRARKLSAKQTDEDQGGEKKEEPLLEPEDETETNPLLGFEDKCPPGGTDT VILYTTTLRGIRKTFEDCSGVRFLLQSLRIRYHERDVSMHMEYREELWRVLGGKIMPPRLFVKGKYIGGAEEVLGLNEQGKFRPLFAGIPAGDSLMEPCE ACNGVCFVLCFNCSGSHRILTGDDDWSWSECLDCNENGLIVCRHCCC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01420			Glutaredoxin family protein (....		Lus10017547 [exp]	0	1
AT3G05330		ATN ,ATTAN	A. THALIANA TAN1, TANGLED, cyc...		Lus10029912 [exp]	1.4	0.9693
AT5G58480			O-Glycosyl hydrolases family 1...		Lus10042269 [exp]	3.2	0.9460
AT3G21060		RBL	RbBP5 LIKE, Transducin/WD40 re...		Lus10035969 [exp]	4.5	0.9359
AT5G07670			RNI-like superfamily protein (...		Lus10031742 [exp]	8.8	0.9441
AT3G52110			unknown protein		Lus10039611 [exp]	8.9	0.9481
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Lus10017715 [exp]	9.4	0.9522
AT3G51280			Tetratricopeptide repeat (TPR)...		Lus10041887 [exp]	11.4	0.9484
AT5G01420			Glutaredoxin family protein (....		Lus10028742 [exp]	14.5	0.9358
					Lus10001684 [exp]	15.2	0.9439
AT5G57590		BIO1	biotin auxotroph 1, adenosylme...		Lus10003630 [exp]	15.3	0.9282

Compare expression of checked genes

Lus10017547 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.