Lus10017548 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G59140 1458 / 0 ATMRP14, ABCC10 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1)
AT1G04120 1016 / 0 ATABCC5, ABCC5, ATMRP5 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2)
AT3G21250 1011 / 0 ATMRP6, ABCC8 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, ATP-binding cassette C8, multidrug resistance-associated protein 6 (.1.2)
AT3G60160 966 / 0 ATMRP9, ABCC9 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1)
AT3G13080 961 / 0 EST2, ATMRP3, ABCC3 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
AT3G62700 925 / 0 ATMRP10, ABCC14 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1)
AT2G47800 921 / 0 EST3, ATMRP4, ABCC4 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1)
AT3G13090 917 / 0 ATMRP8, ATABCC6 ATP-binding cassette C6, multidrug resistance-associated protein 8 (.1)
AT3G13100 904 / 0 ATMRP7, ABCC7 ATP-binding cassette C7, multidrug resistance-associated protein 7 (.1)
AT3G60970 863 / 0 ATMRP15, ABCC15 ATP-binding cassette C15, multidrug resistance-associated protein 15 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027567 1550 / 0 AT3G59140 2001 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1)
Lus10039320 1540 / 0 AT3G59140 1991 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1)
Lus10004896 1050 / 0 AT3G21250 1727 / 0.0 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, ATP-binding cassette C8, multidrug resistance-associated protein 6 (.1.2)
Lus10022858 1008 / 0 AT1G04120 2341 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2)
Lus10018027 950 / 0 AT3G60160 1863 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1)
Lus10042023 940 / 0 AT3G60160 1869 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1)
Lus10011498 929 / 0 AT2G47800 1796 / 0.0 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1)
Lus10024965 902 / 0 AT1G04120 2176 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2)
Lus10023139 849 / 0 AT3G62700 1659 / 0.0 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G095600 1827 / 0 AT3G59140 1639 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1)
Potri.003G135800 1795 / 0 AT3G59140 1580 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1)
Potri.015G023800 1601 / 0 AT3G59140 1894 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1)
Potri.012G033600 1580 / 0 AT3G59140 1948 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1)
Potri.012G033500 1571 / 0 AT3G59140 1948 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1)
Potri.003G034700 1038 / 0 AT3G21250 1773 / 0.0 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, ATP-binding cassette C8, multidrug resistance-associated protein 6 (.1.2)
Potri.014G193400 993 / 0 AT1G04120 2323 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2)
Potri.016G122901 991 / 0 AT3G59140 1144 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1)
Potri.002G255800 989 / 0 AT1G04120 2361 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2)
Potri.001G362300 987 / 0 AT3G13080 2008 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0255 ATP_synthase PF01991 vATP-synt_E ATP synthase (E/31 kDa) subunit
CL0241 ABC_membrane PF00664 ABC_membrane ABC transporter transmembrane region
CL0023 P-loop_NTPase PF00005 ABC_tran ABC transporter
Representative CDS sequence
>Lus10017548 pacid=23163158 polypeptide=Lus10017548 locus=Lus10017548.g ID=Lus10017548.BGIv1.0 annot-version=v1.0
ATGAATGACGCCGATGTCCCAAAGCAGATCCAGCAGATGTGCCGATTCATTCGGCAAGAAGCAGAAGAGAAAGCCAACGAGATCTCCGTTTCTGCTGAGG
AAGAATTCAATATCGAGAAGTTGCAGCTGTTAGAAGCAGAGAAGAAGAAGATCAGGCAGGAGTTTGAGCGTAAGGAGAAGCAAGTTGATGTTCGCAAGAA
GATTGAGTACTCAATGCAGCTGAATGCCTCTCGGATCAAAGTTCTTCAGGCCCAAGATGATGTGGTCAATTCCATGAAAGAGAGCTTGCTTAGACTGAAG
GAACCTGCTGTGTTGCTTCGTTGTCGGAAAGAAGATGTCCATTTGGTGGAATCTGTCTTGCATTCTGCAAAAGAGGAGTATGCTGAAAAAGAAAACGTTC
ATGCACCAGAAATCATATTAGACCACCATATCCATCTTCCACCTGCTCCTAGCCATCACAATGCTCATGGTCCTTCCTGCTCTGGAGGGGTCGTACTTGC
TTCTCGAGATGGGAAGATCGTGTTTGAGAATACCCTTGATGCACGCTTGGAAGTCGTGTTTCGTAAGAAGCTCCCTGAGATGGAGGAGGAAGGGCGCCTC
TGGATTATATTCTGCAGTGAATCACAACTTTCAAATAGAAGTTGTAAGGAATGCAGCCCTAGCAACATACTCGATCCGAGTTCGTGTTCCAACCATGGCT
TGGTACTCAGCATGGATCTCCTGATTATGCTGATCATCTTCTGCATCTTCATTCGCAACAAGTCGTCATCAGCTAGGAAGGCGTCATCAGCTGAACCTCT
TTTTTCTCAAAGCATCTCCAAACTGCTGATTCTGTCAGCGGTATGTAACAGTCTTCTGAGCATGCTTTATCTAGGGGTTGGTATATGGGAAGTCTCCAAC
AAACTTGCTAGTCATCAGACGGTTTTACCGTTACACGGATGGATGGTAGTGTTAATTCAAGGTTTGAGCTTGTTGCTGCTGAATCTCTCCGTGAGCCTCA
ATCAGCAGAAGAAGAGCCGTTTCCACATTGCAGCCGTGAAGTTGTGTTCGGTTTTCGCCTTCTGTGTCTCTGGATTTCTCTGCGTTGCTTCTATATGGCA
AGCCACTGGAGAGAAAGTTGTTACAGTTAAAATGGCTCTTGACATTCTGTCTCTTCCAGGGTCAGCACTAATGATGTATTGTGCTTTCCGGAGAAAAATC
GATCTCCGAAATGATTCTGAAGCACTAGATAGACCTTTGCTTGGCGAAGAAGGAAGGGTTATGGCTTCTGATGATTTTCCTTTTGCAAAAGCTGGAATCT
TTAGCAAGGTGTCATTCTGGTGGTTGAATGCATTGATGAAGAAGGGCAAAGAAAAGATTCTTCAAGATGAGGACATCCCACATTTAAGGAAAGAAGAACA
AGCAAGAACATGTTACTTAACATACTTGGACCAGTTAACGAAATCGAAAGCAAAAGCGCCAAAGTTATGGTCTGTACTACTTACTTGTTACAAGAAGGAA
ATTTTGGTATCTGGGTTCTTTGCATTGATCAAGGTACTAACTTTATCTGCTGGACCTTTACTCCTCAGAGCCTTCATCAATGTTGCTGAACATAAATCGG
TTTTTAAATACGAAGCATACATGCTTACACTAGCACTTCTCTTAGCGAAATGCATCGAGTCAATTTCCGAAAGGCAATACCAGTTCCAAACCAGATTGGT
TGGCGTCCGAGTTAGGTCTTTACTATCAGCAGCTATCTATCAGAAGCAACTAGTTCTGTCAACTGGAGCTAAAACCACTCATTCCCCTGGCGAGATTGTG
AATTATGTTGCCATCGATGCTTACAAAGTAGGCGAATTTTCATACTGGTTTCATCAGATCTGGACTACTATACTTCAGATATTACTGGCATTGTTCATCA
TCTACTACTCTATAGGGATCGCAGCGGTAGCTGCACTGGTTTCCATTATATTGACAGTAGTTGGAGCCTCTCCGTTGACTAAATCACAGCTTACGTATCA
AGTAGGGCTCACGAAGCAGCAAGATAGGAGGCTTAAGGCGGTAACTGAGGCACTTACAAACATGAAGGTGTTGAAGTTGTATGCGTGGGAGACTCATTTT
AGGAAAGTGATAGAGGAGTTGAGGAAAGAAGAGCTTGCTTCGATTTCCATGGTTTTGTTCCAGAGAGGGTGTTTGATGCTCTTGTTTTGGGCATCTCCGA
TTTTGGTATCGACTGTTACTTTCTGGACGTGCTACTTGATTGGCATTCCCCTTAATGCTGGCAACGTTTTCACATTCCTGGCAGCTTTGAGGATTCTTCA
GCAGCCGATTGCGAATGTCTCTGATGTGACGTCGGTGTTTATAGATGCCAAGGTTTCATTGGACAGGATCGAAAAGTTTCTCGAGGCGCCTGAATTGCAA
CAGCAGGATAGGAGCATTGGAGAAAAAGGTAGCAACTTTGAGTTCCCTATCCTCATCCAGTGTTCTGAAATTTCATGGAGTATAGACACTACTACATCTA
TGCCGGCCACATTGAGGAACATAGATTTGGTGGTGAAATTCGGAGAGAAGGTGGCGATTTGTGGAGAGGTTGGCTCAGGAAAGTCAACACTACTGGCTGC
AGTCCTTGGGGAAGTTCCCATAACCAATGGCACAGCGAGTGTCCATGGGAAAATAGCATATGTTTCACAAACAGCATGGATCCAGACTGCAACAATAAGA
GATAACATACTCTTTGGATCAGTGATGGAGCCAGTTAGATACCAGGAGGTGATCAAGTGTTGTTGCTTGATAAAGGATTTGGAAATGCTTCCGAACGGGG
ACCTAACCGAAATCGGGGAAAGGGGAGTTAACCTGAGTGGAGGGCAGAAGCAAAGAATCCAACTTGCCAGAGCACTATATCAGGATGCTGATGTCTACCT
CTTGGATGATCCTTTCAGTGCTGTTGATGCACATACAGCTACTAGCCTATTCAATGAATATGTCATGGGGGCTCTATCAGAGAAGACAGTCTTACTTGTA
ACTCATCAAGTTGACTTCCTTCCAGCATTCAACTTGATTCTGTTGATGTCTTCAGGAGAAATCTTGAACACTGGTACTTATGATCAGATGCTGGGATCCT
GTCGAGAGTTCCATGAACTTGTCAATGCTCACAAGAACACAAACGAAAGGAAAATGCAGCGAAGTTTCAATCTTGACCAAACTACTGATGTTTCCAACAT
ACAGATACTGCAAGTCGATGATAATATAAGAGCAACTTCAGGAGGAGATCAGTTGATAATGAAGGAAGAAAGGGAAACGGGAGATACCGGTTTCAAGCCA
TACCGAGACTACCTGAGTAAGAAGAATGGATTCTTGTTCTGTTTTTTAACAGCCGTGTTCCATTTCTTGTTCCTTGCTGGCCAATTGGTACAGAACTATC
TATTAGCAGCTCATATTGACAATCCTGAAGTGAGCAAAGCAGCACTTTTGACAGTTTATACTGTGATTGGATGTTTCTTGCCAATCTTCATGCTCTTCAG
AAGCCTTGCTCTAGTGAGACTTGGCTGTGATGCGTCGGAGTCGATATTTTCCACACTCTTGAACTCCCTATTCCGGGCACCAATGTCGTTCTATGACTCC
ACTCCTCTCGGAAGAATTCTCAGCCGGGTTTCTTCTGATTTGAGCATCATAGACCTTGAGTTGGCATTCAAATTAACAGTATCAATGGGGTCAACTATGA
ATACATGCACTAACCTGGCACTATTAGCAATCTTGGCATGGCCTATCTTGTTCCTTATCATACCCATCCTTTATCTAATCATGGTCTTACAGAGATACTA
CTTCAATACCGCGAAAGAGCTAATGAGGATGAATGGAACAACCAAGTCATCTGTTGTTAGTCATCTTGGTGAATCCATTGCTGGAGCAATGACAATCAAA
GCCTTTGGAGAAGAAGAAAGATTCTTTAATAAGAATCTTGAATTCATCGATAACAATGCAAGCACTTACTTTCACACCTTCTCAGCAAGCCAGTGGCTGA
TCCAACGCCTCGAGATCCCAGGCGCTATCATTCTTTCAGCCTCAGCATTTGCCATGACTTTGCTTCCTCTCAGTTCTTCCGGTTCAGGATTTGTGGGAAT
GGCACTATCATATGGTCTTTCCCTGAATGTCTTCCTCATAGTTACGATTCAATTCCAGTGCTTCGTACAAGAATCAATCGTTTCGGTAGAAAGGCTAGAA
CAGTACATGCATATTCCGAGTGAAGCTCCAGAAGTTGTGGAAAGCATCAAACTTTCAACCAACTGGCCAAGCCATGGTAAAGTGGAGATATGTAACTTAA
AGGTGAGATATCAGAAGGGAAGTCCATTGGTTCTCAAGGGGATAAGCTGCATCATTGAAGGAGGAGATAAGATTGGTGTAGTGGGGAGGACAGGGAGTGG
GAAGACAACTCTGATAAGCAGTTTGTTCAGGCTGGTGGAGCCAGCAGAAGGAAAAATCATAGTGGATGGCATTGACATCTCCACAATAGGGCTCCATAGC
CTGAGATCTCAGTTTGGAATCATCCCACAAGATCCAACGCTGTTTTCTGGCAGTGTGAGGTACAACCTGGACCCTTTGTCGGAGCACACTGACCGAGAGA
TATGGGAGGTTCTGAAGAAATGTCAGCTCCATGAAACCATTCAACAGAAAGAAGAAGGCTTGAACACATCAGTAGCCCAAGATGGAACAAACTGGAGCAT
GGGGCAGAGGCAGCTGTTCTGTCTGGGGAGAGAACTTTTGAGAAAGAGCAAGGTATTGGTTCTCGACGAAGCAACTGCATCTATTGACAATGCAACGGAT
GCAATCCTTCAGAAGACCATACGGACAGAGTTTGCAGAGTGCACAGTGATCACTGTTGCTCACAGAATCCCAACTGTTATGGATTGCACCAAGGTTCTTG
CCATTAGTGAAGGGAAGTTGGCTGAATATGATGAACCAGGGAAGCTGATGAATGAGGAAGGATCATTGTTTCGCCGGCTCGTAGAGGAATACTGGTCCCG
CGCTACAAACTCGTAA
AA sequence
>Lus10017548 pacid=23163158 polypeptide=Lus10017548 locus=Lus10017548.g ID=Lus10017548.BGIv1.0 annot-version=v1.0
MNDADVPKQIQQMCRFIRQEAEEKANEISVSAEEEFNIEKLQLLEAEKKKIRQEFERKEKQVDVRKKIEYSMQLNASRIKVLQAQDDVVNSMKESLLRLK
EPAVLLRCRKEDVHLVESVLHSAKEEYAEKENVHAPEIILDHHIHLPPAPSHHNAHGPSCSGGVVLASRDGKIVFENTLDARLEVVFRKKLPEMEEEGRL
WIIFCSESQLSNRSCKECSPSNILDPSSCSNHGLVLSMDLLIMLIIFCIFIRNKSSSARKASSAEPLFSQSISKLLILSAVCNSLLSMLYLGVGIWEVSN
KLASHQTVLPLHGWMVVLIQGLSLLLLNLSVSLNQQKKSRFHIAAVKLCSVFAFCVSGFLCVASIWQATGEKVVTVKMALDILSLPGSALMMYCAFRRKI
DLRNDSEALDRPLLGEEGRVMASDDFPFAKAGIFSKVSFWWLNALMKKGKEKILQDEDIPHLRKEEQARTCYLTYLDQLTKSKAKAPKLWSVLLTCYKKE
ILVSGFFALIKVLTLSAGPLLLRAFINVAEHKSVFKYEAYMLTLALLLAKCIESISERQYQFQTRLVGVRVRSLLSAAIYQKQLVLSTGAKTTHSPGEIV
NYVAIDAYKVGEFSYWFHQIWTTILQILLALFIIYYSIGIAAVAALVSIILTVVGASPLTKSQLTYQVGLTKQQDRRLKAVTEALTNMKVLKLYAWETHF
RKVIEELRKEELASISMVLFQRGCLMLLFWASPILVSTVTFWTCYLIGIPLNAGNVFTFLAALRILQQPIANVSDVTSVFIDAKVSLDRIEKFLEAPELQ
QQDRSIGEKGSNFEFPILIQCSEISWSIDTTTSMPATLRNIDLVVKFGEKVAICGEVGSGKSTLLAAVLGEVPITNGTASVHGKIAYVSQTAWIQTATIR
DNILFGSVMEPVRYQEVIKCCCLIKDLEMLPNGDLTEIGERGVNLSGGQKQRIQLARALYQDADVYLLDDPFSAVDAHTATSLFNEYVMGALSEKTVLLV
THQVDFLPAFNLILLMSSGEILNTGTYDQMLGSCREFHELVNAHKNTNERKMQRSFNLDQTTDVSNIQILQVDDNIRATSGGDQLIMKEERETGDTGFKP
YRDYLSKKNGFLFCFLTAVFHFLFLAGQLVQNYLLAAHIDNPEVSKAALLTVYTVIGCFLPIFMLFRSLALVRLGCDASESIFSTLLNSLFRAPMSFYDS
TPLGRILSRVSSDLSIIDLELAFKLTVSMGSTMNTCTNLALLAILAWPILFLIIPILYLIMVLQRYYFNTAKELMRMNGTTKSSVVSHLGESIAGAMTIK
AFGEEERFFNKNLEFIDNNASTYFHTFSASQWLIQRLEIPGAIILSASAFAMTLLPLSSSGSGFVGMALSYGLSLNVFLIVTIQFQCFVQESIVSVERLE
QYMHIPSEAPEVVESIKLSTNWPSHGKVEICNLKVRYQKGSPLVLKGISCIIEGGDKIGVVGRTGSGKTTLISSLFRLVEPAEGKIIVDGIDISTIGLHS
LRSQFGIIPQDPTLFSGSVRYNLDPLSEHTDREIWEVLKKCQLHETIQQKEEGLNTSVAQDGTNWSMGQRQLFCLGRELLRKSKVLVLDEATASIDNATD
AILQKTIRTEFAECTVITVAHRIPTVMDCTKVLAISEGKLAEYDEPGKLMNEEGSLFRRLVEEYWSRATNS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G59140 ATMRP14, ABCC10 ATP-binding cassette C10, mult... Lus10017548 0 1
AT5G36260 Eukaryotic aspartyl protease f... Lus10027001 4.0 0.7839
AT3G21100 RNA-binding (RRM/RBD/RNP motif... Lus10027351 7.5 0.7426
AT1G16570 UDP-Glycosyltransferase superf... Lus10026065 8.8 0.7813
AT2G04560 AtLpxB lipid X B, transferases, trans... Lus10029959 19.0 0.7404
AT1G09010 glycoside hydrolase family 2 p... Lus10000159 23.8 0.7538
AT3G13170 ATSPO11-1 Spo11/DNA topoisomerase VI, su... Lus10016612 25.9 0.7382
AT4G14570 AtAARE, AARE acylamino acid-releasing enzym... Lus10039405 26.9 0.7610
AT5G66130 ATRAD17 RADIATION SENSITIVE 17 (.1) Lus10028430 33.2 0.7501
AT4G03415 Protein phosphatase 2C family ... Lus10018570 38.4 0.7169
AT1G70630 Nucleotide-diphospho-sugar tra... Lus10036861 41.2 0.6311

Lus10017548 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.