Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23730 458 / 4e-164 Galactose mutarotase-like superfamily protein (.1) AT3G61610 442 / 1e-157 Galactose mutarotase-like superfamily protein (.1) AT5G57330 399 / 1e-140 Galactose mutarotase-like superfamily protein (.1) AT3G01590 347 / 4e-120 Galactose mutarotase-like superfamily protein (.1.2) AT5G14500 345 / 2e-119 aldose 1-epimerase family protein (.1) AT4G25900 309 / 3e-105 Galactose mutarotase-like superfamily protein (.1) AT5G66530 129 / 3e-35 Galactose mutarotase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028739 [exp] 585 / 0 AT4G23730 474 / 1e-170 Galactose mutarotase-like superfamily protein (.1) Lus10012640 [exp] 455 / 7e-163 AT3G61610 511 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10010131 [exp] 453 / 4e-162 AT3G61610 518 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10003035 [exp] 429 / 9e-153 AT3G61610 476 / 6e-171 Galactose mutarotase-like superfamily protein (.1) Lus10005147 [exp] 429 / 9e-153 AT3G61610 476 / 6e-171 Galactose mutarotase-like superfamily protein (.1) Lus10020015 [exp] 395 / 4e-139 AT5G57330 534 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10015540 [exp] 388 / 3e-136 AT5G57330 522 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10026106 [exp] 376 / 2e-131 AT5G57330 484 / 1e-173 Galactose mutarotase-like superfamily protein (.1) Lus10000414 [exp] 370 / 1e-128 AT5G57330 475 / 9e-170 Galactose mutarotase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G095300 [exp] 509 / 0 AT3G61610 461 / 3e-165 Galactose mutarotase-like superfamily protein (.1) Potri.002G167200 [exp] 450 / 6e-161 AT3G61610 513 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.018G089800 [exp] 409 / 1e-144 AT5G57330 513 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.006G165400 [exp] 407 / 7e-144 AT5G57330 525 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.001G037700 [exp] 394 / 2e-138 AT5G57330 483 / 2e-173 Galactose mutarotase-like superfamily protein (.1) Potri.003G187300 [exp] 392 / 7e-138 AT5G57330 475 / 3e-170 Galactose mutarotase-like superfamily protein (.1) Potri.001G344100 [exp] 352 / 3e-122 AT5G14500 501 / 0.0 aldose 1-epimerase family protein (.1) Potri.007G023200 [exp] 142 / 3e-40 AT5G66530 483 / 1e-173 Galactose mutarotase-like superfamily protein (.1.2) Potri.019G034000 [exp] 47 / 9e-06 AT1G55370 267 / 9e-87 NDH-dependent cyclic electron flow 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF01263 [flax] [poplar] Aldose_epim Aldose 1-epimerase
Representative CDS sequence Show only first row Show all	>Lus10017549 pacid=23163113 polypeptide=Lus10017549 locus=Lus10017549.g ID=Lus10017549.BGIv1.0 annot-version=v1.0 ATGAATCATTCTGGAGCAGTTGAAATTACAAAGGATAAAAATGGGATTGATCAGATTCTGCTTCGTAACCTTCGAGGAGCCTCCGCAAGGGTTAGCCTGC ATGGGGGGCAAGTTCTTTCCTGGAGAACTGACCAAGGCGAAGAATTGCTCTTCACTAGCAGTAAGGCTATATTCAAACCACCTAATCCTATCAGAGGAGG AATTCCAATATGCTTCCCTCAGTTTGGGAATCGAGGAGCACTGGAGCAACATGGATTTGCAAGGAAGAAGCTTTGGGTAGTTGATGATAACCCACCACCG TTACCCGCCAATGATTCCAATGGCAAGTCATACGTTGATTTGCTCCTGAAACCATCTGACGATGACCTCAAGAATTGGCCTCACAGCTTTGAGTTTCGGC TGAGGGTAGCATTGACATCGGAAGGGAATGTCACAATGATATCACGCATCAGGAACATCAATTGCAAGCCATTCAGTTTCTCAATTGCTTACCATACTTA TTTCTCCATTTCAGACATCAATGAAGTGAGGGTGGAAGGATTGGAAACACTTGATTACTTAGACAACCTATGTCAAAGAGAGCGATTCACAGAACAAGGA GATGCATTGACATTCGAATCTGAGGTGGACAGGGTGTATCTGAGTTCATCAGGTGTGGTTGCTGTATTCGATCACCAGAAGAAGAGAACATTTCAGATCA GAAAAGAAGGGCTTCCAGATATTGTGGTGTGGAATCCATGGGAGAAGAAATCAAAAGCAATGGCAGACCTTGGAGATGAAGAATACAAACAGATGTTGTG TGTTGATGGAGCTGCAATAGAGAAGCCTATAACCTTGAAGCCTGGTGAGGAATGGACTGGCCGCCTTGAACTCTCTGTCATCCATTCCAGTTGA
AA sequence Show only first row Show all	>Lus10017549 pacid=23163113 polypeptide=Lus10017549 locus=Lus10017549.g ID=Lus10017549.BGIv1.0 annot-version=v1.0 MNHSGAVEITKDKNGIDQILLRNLRGASARVSLHGGQVLSWRTDQGEELLFTSSKAIFKPPNPIRGGIPICFPQFGNRGALEQHGFARKKLWVVDDNPPP LPANDSNGKSYVDLLLKPSDDDLKNWPHSFEFRLRVALTSEGNVTMISRIRNINCKPFSFSIAYHTYFSISDINEVRVEGLETLDYLDNLCQRERFTEQG DALTFESEVDRVYLSSSGVVAVFDHQKKRTFQIRKEGLPDIVVWNPWEKKSKAMADLGDEEYKQMLCVDGAAIEKPITLKPGEEWTGRLELSVIHSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23730			Galactose mutarotase-like supe...		Lus10017549 [exp]	0	1
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10018124 [exp]	1.7	0.8028
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10011606 [exp]	6.9	0.8281
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015745 [exp]	8.4	0.7963
					Lus10008157 [exp]	10.4	0.7701
AT5G01740			Nuclear transport factor 2 (NT...		Lus10017421 [exp]	18.2	0.7939
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10018381 [exp]	18.3	0.7524
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10032188 [exp]	33.7	0.7691
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10013952 [exp]	38.5	0.7480
AT1G70420			Protein of unknown function (D...		Lus10030876 [exp]	48.5	0.7709
AT1G27680		APL2	ADPGLC-PPase large subunit (.1...		Lus10007209 [exp]	59.8	0.7163

Compare expression of checked genes

Lus10017549 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.